 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | EMT18461 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
| Family | bHLH | ||||||||
| Protein Properties | Length: 255aa MW: 27458.3 Da PI: 8.2911 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 32.9 | 1.2e-10 | 60 | 105 | 4 | 54 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
h+e+ErrRR riN ++ Lr+++P k ++Ka+ L ++v+ +++L
EMT18461 60 VHSEAERRRRVRINAHLAALRKMIPDT-----KQMDKAALLARVVDQVRHL 105
59************************9.....67************99999 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50888 | 14.03 | 56 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 1.5E-12 | 59 | 113 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 1.9E-8 | 60 | 105 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SuperFamily | SSF47459 | 9.29E-13 | 60 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 4.94E-10 | 61 | 107 | No hit | No description |
| SMART | SM00353 | 5.7E-10 | 62 | 111 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:3.30.70.260 | 4.9E-5 | 146 | 191 | No hit | No description |
| CDD | cd04873 | 1.64E-4 | 147 | 216 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 255 aa Download sequence Send to blast |
MAAPCQSPQG ENELYDDCDP TVYGARALLP RQTTSAPPAG PPEASTGSGR TATEARALKV 60 HSEAERRRRV RINAHLAALR KMIPDTKQMD KAALLARVVD QVRHLKRRAS EAAQLTPAVP 120 PEADVVSVEF CCTGDTDDDD RRLYMKVSVS CDDRPDLVAG LIQALHGLRL RTVRAEVTSL 180 GGRVQHVFTL CKEEEEGGSA GRAGLISLKE AVRLALAKVA SPELVCGGSS GSGSPLQLQS 240 KRQRILESHY SIMSI |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020170465.1 | 0.0 | putative transcription factor bHLH107 isoform X1 | ||||
| Refseq | XP_020170466.1 | 0.0 | putative transcription factor bHLH107 isoform X1 | ||||
| TrEMBL | A0A453E4X7 | 0.0 | A0A453E4X7_AEGTS; Uncharacterized protein | ||||
| STRING | EMT18461 | 0.0 | (Aegilops tauschii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP3347 | 36 | 78 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G40200.1 | 4e-32 | bHLH family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|