PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18616
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SBP
Protein Properties Length: 123aa    MW: 13341.5 Da    PI: 8.7775
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18616genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP64.62.1e-2058105249
               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSE CS
       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrf 49 
               C vegC+adls++++y+ rhkvCe+hsk+p ++v+g+  rfCqqCsr 
  EMT18616  58 CAVEGCKADLSKCRHYYMRHKVCEAHSKMPLAIVAGRAMRFCQQCSRN 105
               **********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-2151104IPR004333Transcription factor, SBP-box
PROSITE profilePS5114115.76855123IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-1956106IPR004333Transcription factor, SBP-box
PfamPF031108.4E-1558104IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 123 aa     Download sequence    Send to blast
MPGSWDLAEL EHYAVPARPT PALAPPAWST AAAVVPSPSP LKRPRLVSSG RAGHCPSCAV  60
EGCKADLSKC RHYYMRHKVC EAHSKMPLAI VAGRAMRFCQ QCSRNKCEHQ DLNLDGLGIP  120
QPV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A1e-1358104652squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0949132e-45FP094913.1 Phyllostachys edulis cDNA clone: bphyem212i14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197530.15e-41squamosa promoter-binding-like protein 18
SwissprotQ0J0K13e-25SPL18_ORYSJ; Squamosa promoter-binding-like protein 18
TrEMBLN1R0305e-85N1R030_AEGTA; Squamosa promoter-binding-like protein 18
STRINGEMT186168e-86(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.25e-17squamosa promoter binding protein-like 8