PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT18683
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 461aa    MW: 50981 Da    PI: 7.7216
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT18683genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.30.0011142164123
               EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
               +kC+ C+k +  +s+ + H + +
  EMT18683 142 WKCERCSKKYAVQSDWRAHTKIC 164
               58*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.7E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.63E-66588No hitNo description
PROSITE profilePS5015710.9076688IPR007087Zinc finger, C2H2
SMARTSM003550.0946688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035550107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.1E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.63E-6137162No hitNo description
SMARTSM00355210142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MSQTSEEESL FNFRQQQKLA LCEAALSKGN PIIHAGKKRR GHPGQPDPDA EVVAFSPKTL  60
LATNRYICEV CHKGFQRDQN LQLHRRCHNL PWKLKQTSGT DAKKKVYICP EATCPHHDAT  120
RALGDLTGIK KHYSRKHGEK KWKCERCSKK YAVQSDWRAH TKICGTKEYR CDCGTIFSRK  180
DSFITHRAFC DALTEDNSRI NQSLAAMVGS LHGQQQCIFP HTIPGADSSP TDAAGNFSGN  240
DQSSDDHLGS LSPYTFIRRS TSLFSNQMIL PHDSGTLADG SEPSSPYMSM SSPYMSATAL  300
LQKAAEMGAK TSEDPTTPLL LKGFPNYFTT KGHIGISSGI LGTPIANSDR KKTAEDNSSY  360
MNSTWTGSCM RPPNAVPWIG LPPFSMGAEN RSSIMVDADH MQQNAHETIF GVRDVGLTQD  420
FLGLGGHGNA EMHDDTYNGE MALSYSNEQQ KSEQDIYSYH Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-33138201366Zinc finger protein JACKDAW
5b3h_F1e-33138201366Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020201379.10.0protein indeterminate-domain 12-like
TrEMBLA0A3B6DDW40.0A0A3B6DDW4_WHEAT; Uncharacterized protein
TrEMBLR7WAL20.0R7WAL2_AEGTA; Zinc finger protein JACKDAW
STRINGEMT186830.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-101indeterminate(ID)-domain 2