 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | EMT19245 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
|
||||||||
| Family | FAR1 | ||||||||
| Protein Properties | Length: 2210aa MW: 247025 Da PI: 5.5705 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 29.3 | 2.9e-09 | 1883 | 1926 | 48 | 90 |
FAR1 48 tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
+ ++rr r+etr++C a+l+vk++k +g+w v+ + +HnH la
EMT19245 1883 KGRTRRLRSETRCECGAHLVVKLDKgRGVWFVAAFMDDHNHLLA 1926
3578999**********************************986 PP
| |||||||
| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF12442 | 3.4E-31 | 17 | 114 | IPR022149 | Protein of unknown function DUF3681 |
| SMART | SM00614 | 0.0022 | 317 | 367 | IPR003656 | Zinc finger, BED-type |
| SuperFamily | SSF52540 | 3.91E-58 | 448 | 724 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Gene3D | G3DSA:3.40.50.300 | 1.0E-9 | 468 | 607 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
| Pfam | PF00931 | 4.4E-53 | 470 | 752 | IPR002182 | NB-ARC |
| PRINTS | PR00364 | 1.3E-10 | 490 | 505 | No hit | No description |
| PRINTS | PR00364 | 1.3E-10 | 564 | 578 | No hit | No description |
| PRINTS | PR00364 | 1.3E-10 | 661 | 675 | No hit | No description |
| Gene3D | G3DSA:3.80.10.10 | 1.9E-10 | 802 | 1031 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 1.36E-22 | 823 | 1030 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| PRINTS | PR00364 | 1.3E-10 | 922 | 938 | No hit | No description |
| SuperFamily | SSF52058 | 1.36E-22 | 1078 | 1234 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| Gene3D | G3DSA:3.80.10.10 | 7.3E-12 | 1081 | 1238 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SMART | SM00367 | 500 | 1136 | 1161 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| Gene3D | G3DSA:3.80.10.10 | 7.3E-12 | 1298 | 1341 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SuperFamily | SSF52058 | 3.06E-26 | 1298 | 1588 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SMART | SM00367 | 95 | 1301 | 1326 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| SMART | SM00367 | 82 | 1387 | 1415 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| Gene3D | G3DSA:3.80.10.10 | 3.4E-20 | 1398 | 1616 | IPR032675 | Leucine-rich repeat domain, L domain-like |
| SMART | SM00367 | 34 | 1472 | 1495 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| SMART | SM00367 | 230 | 1514 | 1542 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| SMART | SM00367 | 110 | 1558 | 1578 | IPR006553 | Leucine-rich repeat, cysteine-containing subtype |
| Pfam | PF03101 | 1.6E-6 | 1883 | 1926 | IPR004330 | FAR1 DNA binding domain |
| Pfam | PF10551 | 9.4E-15 | 2048 | 2108 | IPR018289 | MULE transposase domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0016021 | Cellular Component | integral component of membrane | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0043531 | Molecular Function | ADP binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 2210 aa Download sequence Send to blast |
MDVESNARAM AEAGRDCTKL PLALIPGGVF QAAAALRLFV FKKPDGMFLH HGKVAFYLYY 60 ALLTAVALFG FVEASLGFWV ARDLHDRRRQ TYGKVAMVVS LLFLVLVGGL GGFAMPNTPH 120 LPPTYLASAV DHSLSRSFEM EEEALRAAME DAFLEGAVEW RADTILQTLR MDKLDAWIRG 180 EGLADEIEGL KSEIDEVMAT VSYVKGRAVG NRRMARSLAA LKQKLFDADD AVDELDYYRL 240 QHHIVEVEGG QHALPSSSNA HNRFASDGVT QSFTTATTTT AAVTLQEPEG MHEAARVDHG 300 TSMGDGDNIL PRRGRGKKRS PHWIDFDEIY DTDGKTVGAK CRHCKKKLKY DGKQGPRVLM 360 THSNSASMDD ATENATPVAV SNSPSIPRMG TNPEPTQITA AVAHPWNKDE ISSKIQKITH 420 QLQGIRGDVT KDLNMLGSHY GASSAHHQST ASDPSRRTSS LLQGKVYGRD KEKNTIIQLM 480 TAGKSDSLTV VPIVGIGGTG KTALVQFVYN DPKVQNQFDH SIWVWVSNSF DEMRLTKEML 540 DVVPQEKHEG LCSLDKLQQV LKTHIESKRV LLILDDVWDG MNDGKLDLIL APFKSSNANG 600 NVILVTTRYL SVAKRMGTTE PVVLHALGGY DFWLLFKARA FRDENYEGNL TNIGREIAGK 660 LKGNPLAAVT AGELLRVDLT VDHWTKILKD EGWKLLGLSG GIMSSLKFSY DQLPYHLHQC 720 LTFCSIFPDN HEFLDEELVR IWISQGFVKQ SNPSKRLEDI GMDYLSDLVN LSYFQRVVRK 780 DSYVVCGLMH DFSRIVSRTD CAIIDGLECT DILPTVQHLS VECKKDQHGN VSWSSKFKED 840 LRKTVTSVRK LRTLLLIGQY DCSFFQSFED IFQKAHYIRL LQISATFQDF NSLVRSSVNP 900 THLRYLKLTV NEVQGDLPQV LSNFCHLQVL DVGSNTHLDV AHGMNNLVSL RHLVVASIYR 960 IGKLTSLQTL SNFSVQDSNG FRIIELQSMN DLSQLMISQL QNVKTLEEAC GAGLRYKRHL 1020 EKLHLSWNMS DVESDSDGSN ESDSDGSNES DSDDSNESAN VMSSEPSTSK ETEECLQTEV 1080 LEGLEPHNNL KHLQITGYNG ATSPSWLTRN ISLSYLQTLY LNGCGEWRIL PSLRGLPFLA 1140 KLNLRNMPKL EEVSVPSLEE LVLVKMPKLE RCSCLSLREL NSCLRVLKII NCIALKVFDL 1200 FGNGHKLNIE QKSWLPRIWE LIIHNCPLLL VPHPLPSSSI VSRISMIGAL KFPIMNLRSC 1260 GSLAIGKDSE DDEYGSDEDS LEELSDELLA LDGKILAFHN LRFLTELIID YCKSLTSISL 1320 KGLSQLVSLE TLRIKNCPGL SGFDVPPEHT HEDLTVANYN TLPSLEYLEI WSCGIAWEWL 1380 SLILQHAPAL TELDLWDCPK LESLQLNSCT TLQKLSVIDC ESLGTLELHF CTALEDLFIC 1440 EAAVCVLEGS QSLRKLRLRG SHYLESLKLH SCTALEELDI RSCTPDHALP SLEYLEIGSC 1500 RIAWEWLSLI LQHAPALTEL DLWDCPKLGS LQLNSCTTLE KLSVDDCESL GTLELHFCTA 1560 LEELNIWSCP SLCTLEDLPP SLEELTIFRG SEELKHQSIS RASSKLKVGD LKISDCVKAA 1620 GNGPPTFTGR VGHLALQLKA TLRLQIPPFS FSSPSIPQTA DFPDLLARPG LVPAEIYLWM 1680 AIHPEYDGWN ISVASCTGCL VVDLVVGRRG DVAYVDAVAA RNSVINLSGN VLAVRSQARP 1740 AEVHVHAIEW DGSDSVDRSN GNDNSSDNES WSSYDNLPEE SFQKKEEGAC SENEDIDVQN 1800 EENHGVESFA DNISQANFDG WSGDDGYEHE DGANMDIEEA EIQQRALETQ LKVMGMTLAS 1860 QWEAYMFYNN YAKDHGFSIR KDKGRTRRLR SETRCECGAH LVVKLDKGRG VWFVAAFMDD 1920 HNHLLARADE VVYLRSHRVM GNHQIAEILA MEGAGIRKHI IVDNFISRYG SYDKCGFLRR 1980 DVYNLCCREK MKLIAKGDAN TAIGILRSKK EKDPDFFFEY VLDKEGRLKS MFWCDAQSRR 2040 DYQLYGDVTV FDSTYKMSRY GMPSIPFVGV NNHHCTIVFG CAIVSDETEA TYVWLLQTFL 2100 KANCQKKPSN QRSESLNSCL HLHLDGGMTI VDLVVHYENC IVRLRENEAH DDCVSNQSLP 2160 PSVTEYKDIE KHAAEKFTHS NFYILQQDLK KMGELEISET LVGVDVGNMP |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j5t_C | 6e-38 | 417 | 1163 | 110 | 834 | Disease resistance RPP13-like protein 4 |
| 6j5t_F | 6e-38 | 417 | 1163 | 110 | 834 | Disease resistance RPP13-like protein 4 |
| 6j5t_G | 6e-38 | 417 | 1163 | 110 | 834 | Disease resistance RPP13-like protein 4 |
| 6j5t_L | 6e-38 | 417 | 1163 | 110 | 834 | Disease resistance RPP13-like protein 4 |
| 6j5t_O | 6e-38 | 417 | 1163 | 110 | 834 | Disease resistance RPP13-like protein 4 |
| 6j5u_A | 6e-38 | 417 | 1163 | 110 | 834 | Disease resistance RPP13-like protein 4 |
| 6j5v_A | 6e-38 | 417 | 1163 | 110 | 834 | Disease resistance RPP13-like protein 4 |
| 6j5w_A | 6e-38 | 417 | 1163 | 110 | 834 | Disease resistance RPP13-like protein 4 |
| 6j6i_C | 6e-38 | 417 | 1163 | 110 | 834 | Disease resistance RPP13-like protein 4 |
| 6j6i_F | 6e-38 | 417 | 1163 | 110 | 834 | Disease resistance RPP13-like protein 4 |
| 6j6i_G | 6e-38 | 417 | 1163 | 110 | 834 | Disease resistance RPP13-like protein 4 |
| 6j6i_L | 6e-38 | 417 | 1163 | 110 | 834 | Disease resistance RPP13-like protein 4 |
| 6j6i_O | 6e-38 | 417 | 1163 | 110 | 834 | Disease resistance RPP13-like protein 4 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | HG670306 | 0.0 | HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_020197461.1 | 0.0 | putative disease resistance protein RGA4 isoform X1 | ||||
| Refseq | XP_020197462.1 | 0.0 | putative disease resistance protein RGA4 isoform X1 | ||||
| Refseq | XP_020197463.1 | 0.0 | putative disease resistance protein RGA4 isoform X1 | ||||
| Refseq | XP_020197464.1 | 0.0 | putative disease resistance protein RGA4 isoform X1 | ||||
| Refseq | XP_020197466.1 | 0.0 | putative disease resistance protein RGA4 isoform X1 | ||||
| Refseq | XP_020197467.1 | 0.0 | putative disease resistance protein RGA4 isoform X1 | ||||
| Refseq | XP_020197468.1 | 0.0 | putative disease resistance protein RGA4 isoform X1 | ||||
| Refseq | XP_020197469.1 | 0.0 | putative disease resistance protein RGA4 isoform X1 | ||||
| Refseq | XP_020197470.1 | 0.0 | putative disease resistance protein RGA4 isoform X1 | ||||
| Refseq | XP_020197471.1 | 0.0 | putative disease resistance protein RGA4 isoform X1 | ||||
| TrEMBL | R7WEU6 | 0.0 | R7WEU6_AEGTA; Putative disease resistance protein RGA4 | ||||
| STRING | EMT19245 | 0.0 | (Aegilops tauschii) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP9 | 2 | 2 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 2e-39 | FAR1-related sequence 5 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|