PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19543
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 147aa    MW: 17058.5 Da    PI: 7.6758
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19543genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.33.4e-2056109456
               -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               +++ft+eq++ Le++F+  + ++  +e++eLA++lgL+ rqV +WFqN+Ra+++
  EMT19543  56 KRRFTEEQIRSLESMFHAhHAKLEPREKAELARELGLQPRQVAIWFQNKRARWR 109
               458**************9899********************************9 PP
2HD-ZIP_I/II1247.1e-4054143189
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                  e+krr+++eq+++LE++F++++ kLep++K+elareLglqprqva+WFqn+RAR+++kqlE+d++aL++ ydal+++ e+L++e+ +L++
     EMT19543  54 ERKRRFTEEQIRSLESMFHAHHaKLEPREKAELARELGLQPRQVAIWFQNKRARWRSKQLEHDFAALRADYDALHSRVESLKQEKLALAA 143
                  69******************999**************************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.18E-1941113IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-2050116IPR009057Homeodomain-like
PROSITE profilePS5007117.84850111IPR001356Homeobox domain
SMARTSM003892.6E-1953115IPR001356Homeobox domain
PfamPF000469.8E-1855109IPR001356Homeobox domain
CDDcd000862.36E-1459112No hitNo description
PRINTSPR000312.8E-78291IPR000047Helix-turn-helix motif
PROSITE patternPS00027086109IPR017970Homeobox, conserved site
PRINTSPR000312.8E-791107IPR000047Helix-turn-helix motif
PfamPF021835.7E-12111144IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDYHQQQQFL MPPPASLPAQ QQQLCAPMMG MDMEMEMEEQ LCFVGRGGGG RGAERKRRFT  60
EEQIRSLESM FHAHHAKLEP REKAELAREL GLQPRQVAIW FQNKRARWRS KQLEHDFAAL  120
RADYDALHSR VESLKQEKLA LAAQDLA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT2243760.0KT224376.1 Triticum aestivum cultivar RAC875 HDZipI-5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020200397.11e-100homeobox-leucine zipper protein HOX22-like
SwissprotQ01IK03e-54HOX22_ORYSI; Homeobox-leucine zipper protein HOX22
SwissprotQ7XUJ53e-54HOX22_ORYSJ; Homeobox-leucine zipper protein HOX22
TrEMBLN1R0E81e-102N1R0E8_AEGTA; Homeobox-leucine zipper protein HOX22
STRINGEMT195431e-103(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP40273175
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.22e-33homeobox 7