PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19900
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SBP
Protein Properties Length: 385aa    MW: 40205.2 Da    PI: 9.0764
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19900genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP136.21e-4276151176
               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
               +CqvegC +dls ak+yh+rhkvC++h+k p v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  EMT19900  76 RCQVEGCGVDLSGAKQYHSRHKVCSMHTKEPRVVVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKA 151
               6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.1E-3570138IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.65974151IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.27E-4075155IPR004333Transcription factor, SBP-box
PfamPF031103.7E-3277150IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0042127Biological Processregulation of cell proliferation
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEIGSGGDGS GGGGGDDQQR HGLKFGKKIY FEDATGTGGG SGSGGVNASL SKPPAGSGRK  60
GKAVAAGGAS GSAPPRCQVE GCGVDLSGAK QYHSRHKVCS MHTKEPRVVV AGLEQRFCQQ  120
CSRFHQLPEF DQGKRSCRRR LAGHNERRRK APPGPLATRY GRLAASFEEP GRFRSYLLDF  180
SYPRVPSSVR DAWPGARPGY RMPGEIQWQG NLDLRPHTGA ATGYHGHHAY SSHGGGFPGP  240
ELPPSGCLAG VAADSSCALS LLSTQPWDNT PHGASHDHRS AGFDGHPVGV SPSIMASNYM  300
PPPASPWGGS RGHEGGRNAP HQQLPHDVPL HEAHHPAGSS QHGHFSGELE LALQGNRPAP  360
GPRGGDHSSG GGAFDHPGSS SNWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-3268150184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00412DAPTransfer from AT3G57920Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4478770.0KF447877.1 Triticum aestivum squamosa promoter-binding-like protein 17 (SPL17) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146461.10.0squamosa promoter-binding-like protein 17
SwissprotA3C0571e-133SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLA0A3B6TQC30.0A0A3B6TQC3_WHEAT; Uncharacterized protein
TrEMBLA0A453RJM50.0A0A453RJM5_AEGTS; Uncharacterized protein
TrEMBLN1R1940.0N1R194_AEGTA; Squamosa promoter-binding-like protein 17
STRINGEMT199000.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25273787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.14e-44squamosa promoter binding protein-like 9