PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT19908
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 388aa    MW: 44206.1 Da    PI: 10.2422
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT19908genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.12.1e-20871671298
               HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
        B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                + r+++p kfa+++ g+   ++t++l +++g + +v++  +k+  + vl +GWk F++a++L++gDf+vFk+dg+se   +v +f 
  EMT19908  87 FHERMIIPDKFAQHFRGQ--IGRTIKLASRHGYTSDVQI--TKNLAKLVLDSGWKAFARAHNLRTGDFLVFKYDGNSEL--KVLIFG 167
               4568********888878..6789***************..********************************997766..887775 PP
2B346.56.5e-152973831099
               HHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
        B3  10 vlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
               +++++ l +++k+ae +     ke+   +   +++g++Wev++++++++ +  l +GWk+F++ n L  gD+++F+l ++ ++  ++++++rk
  EMT19908 297 YGATRSLDISRKYAEVYlpF--KEQ---MLTLQLHGKKWEVRCRVKNNKTKR-LMRGWKHFARGNSLWLGDVCLFELLRNkKKYVMNLHIIRK 383
               45566799******999532..223...555789*********997777665.556********************99997888888888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-2375171IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.56376169IPR003340B3 DNA binding domain
SuperFamilySSF1019363.14E-2376171IPR015300DNA-binding pseudobarrel domain
PfamPF023626.6E-1879166IPR003340B3 DNA binding domain
CDDcd100172.37E-2279166No hitNo description
SMARTSM010194.4E-1579169IPR003340B3 DNA binding domain
SuperFamilySSF1019362.49E-19280382IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-20280384IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.647288384IPR003340B3 DNA binding domain
CDDcd100178.64E-15290382No hitNo description
SMARTSM010194.0E-8291384IPR003340B3 DNA binding domain
PfamPF023622.6E-13296383IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MPLGPAVVDV SDATPHLLHE HHMLPLVPSP PHAFPLHSQP SPKAPDDTFR KEMSKPWMKH  60
KELDEHRYRN HTGEQDKNFF KVMIGDFHER MIIPDKFAQH FRGQIGRTIK LASRHGYTSD  120
VQITKNLAKL VLDSGWKAFA RAHNLRTGDF LVFKYDGNSE LKVLIFGPSG CEKLPVCNLM  180
KNAAPGKDWW GNTDDIVNTC HDPPMKFPHC GRQIRPSMDS SRQGNDIINV SSSSSASDSA  240
GGISSSEDDL SLPGCILANG TLLNLNQVQK KQLKEKVRAM NSEVPIYGCV IRKSSIYGAT  300
RSLDISRKYA EVYLPFKEQM LTLQLHGKKW EVRCRVKNNK TKRLMRGWKH FARGNSLWLG  360
DVCLFELLRN KKKYVMNLHI IRKSLYKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162967.10.0putative B3 domain-containing protein Os03g0621600
SwissprotQ851V51e-100Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLR7WD090.0R7WD09_AEGTA; Putative B3 domain-containing protein
STRINGEMT199080.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.18e-15B3 family protein