PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20130
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 215aa    MW: 25050 Da    PI: 6.7408
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20130genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.3e-19105198199
               EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
               f+k++t+  +++ +++++pk+f+e+        +  ++l d+   ++ + ++ +k +++++l+kGW+eF+  ++L+ gD +vF+l+++ +f  +v +fr+
  EMT20130 105 FVKTMTHVCASRAKQMMIPKHFIEHLpA----HDEAVVLVDQADDEFHMMCNASKEGRHCYLSKGWREFAVHHDLENGDCLVFQLIDSAKF--KVYIFRA 198
               8999999999999**********55532....3457***************99999999**************************986666..9999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-21101199IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.44E-22101199IPR015300DNA-binding pseudobarrel domain
CDDcd100179.46E-26103197No hitNo description
SMARTSM010192.4E-13105199IPR003340B3 DNA binding domain
PROSITE profilePS5086312.858105199IPR003340B3 DNA binding domain
PfamPF023623.5E-18105198IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MEESNSYEEQ RRRQIEENRR KLDELRLHHL SAAVREAAAR PKPNPNPKPR PPNYLKGAQQ  60
RDDQGVYAAY DARIWKGPTD EERAAAVAKA EELQRRIHRI RRPAFVKTMT HVCASRAKQM  120
MIPKHFIEHL PAHDEAVVLV DQADDEFHMM CNASKEGRHC YLSKGWREFA VHHDLENGDC  180
LVFQLIDSAK FKVYIFRANP DYESDQTSDD SEDEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640943e-51AK364094.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2021K08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020182055.11e-145B3 domain-containing protein Os06g0194400-like
TrEMBLR7WFN71e-159R7WFN7_AEGTA; B3 domain-containing protein
STRINGEMT201301e-160(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42700.15e-17B3 family protein