PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT20433

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Nin-like

Protein Properties

Length: 239aa MW: 27292.9 Da PI: 4.8569

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT20433	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	85.9	3.6e-27	113	162	3	52
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++e +s+yF++pi++AA+eL+v+lTvLK++CR++GI+RWPhRk+k l EMT20433 113 RVLTFELVSQYFYMPITQAARELNVGLTVLKKKCRELGIPRWPHRKLKNL 162 6699*******************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.44	99	182	IPR003035	RWP-RK domain
Pfam	PF02042	8.9E-22	115	161	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MDSNGEHSFW PYGPSVWHDS YLLEDEALLC SLPFLSFGCQ PLCSNSPAVA QSSSLQGELD 60 TSFDDDLLRC WEAIEQSDDS TEDSGKGLPL LCYGEESGAA SNAMRADRVR SERVLTFELV 120 SQYFYMPITQ AARELNVGLT VLKKKCRELG IPRWPHRKLK NLQTLINDVE VLQEAGKAND 180 GEQLRAMVEM LEQERRLLEQ RPYVELEEKT KRLRQACFKA SYKKRRLLVL EPGEASKYY

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP003509	1e-41	AP003509.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0525F01.
GenBank	AP003569	1e-41	AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05.
GenBank	AP014962	1e-41	AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBank	CP012614	1e-41	CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164800.1	1e-177	protein RKD4-like
TrEMBL	N1R1N7	1e-176	N1R1N7_AEGTA; Uncharacterized protein
STRING	EMT20433	1e-177	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4590	33	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	7e-38	RWP-RK domain-containing protein