PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20520
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bZIP
Protein Properties Length: 230aa    MW: 25146 Da    PI: 8.4638
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20520genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.63.5e-10140187552
               CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
    bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 
               kr +r   NR +A rs +RK  +i+eLe kv++L++e ++L  +l ++
  EMT20520 140 KRVKRILANRQSAARSKERKMRYIQELEHKVQVLQTEATTLSAQLTMM 187
               899**************************************9888766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003384.6E-18136200IPR004827Basic-leucine zipper domain
PfamPF077162.0E-9137189IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.473138201IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1706.4E-10140195No hitNo description
SuperFamilySSF579596.25E-12140190No hitNo description
CDDcd147031.73E-19141190No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MDLDGMDALN SSEDRHDDRD SHSRASGTRA ASAAESSENE AESQSTSAER KDGAKSRHCR  60
SLSMDSFMGK LNYATGDDSP KLPLPSPSGG LSRSGSGSLD GGGAASLFGT EFANGEFTEA  120
EKKKIMANER LAEIALTDPK RVKRILANRQ SAARSKERKM RYIQELEHKV QVLQTEATTL  180
SAQLTMMQRD SGGLATQNNE LKIRLQAMEQ QAQLRDGFIK AKQTVYIKMQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor probably involved in vascular development and shoot tissue organization. Binds to the DNA sequence 5'-CCGAGTGTGCCCCTGG-3' present in the promoter region Box II of the phloem-specific rice tungro bacilliform virus (RTBV) promoter. May regulate tissue-specific expression of the RTBV promoter and virus replication. {ECO:0000269|PubMed:14704272}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU9843780.0GU984378.1 Triticum aestivum cultivar CB037 bZiP-like trancription factor (SF) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153125.11e-154transcription factor RF2a-like
SwissprotQ6S4P44e-41RF2B_ORYSJ; Transcription factor RF2b
TrEMBLR7WG181e-167R7WG18_AEGTA; Transcription factor RF2b
STRINGEMT205201e-168(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62473650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38900.32e-57bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Dai S,Zhang Z,Bick J,Beachy RN
    Essential role of the Box II cis element and cognate host factors in regulating the promoter of Rice tungro bacilliform virus.
    J. Gen. Virol., 2006. 87(Pt 3): p. 715-22
    [PMID:16476995]
  3. Liu Y,Dai S,Beachy RN
    Role of the C-terminal domains of rice (Oryza sativa L.) bZIP proteins RF2a and RF2b in regulating transcription.
    Biochem. J., 2007. 405(2): p. 243-9
    [PMID:17371296]
  4. Dai S, et al.
    Transgenic rice plants that overexpress transcription factors RF2a and RF2b are tolerant to rice tungro virus replication and disease.
    Proc. Natl. Acad. Sci. U.S.A., 2008. 105(52): p. 21012-6
    [PMID:19104064]