PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT20928
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 234aa    MW: 25695.8 Da    PI: 6.571
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT20928genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.42.2e-1762115356
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               k++++++eq + Le  F+k+r++ + ++ +LA++lgL+++qV vWFq rRa++k
  EMT20928  62 KKRRLSDEQAQFLEMSFRKERKLETPRKVQLAAELGLDTKQVAVWFQTRRARYK 115
               45689************************************************9 PP
2HD-ZIP_I/II108.16.3e-3562153293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  kkrrls+eq+++LE+sF++e+kLe+ rKv+la eLgl+++qvavWFq rRAR+k+k +E+++++L++a+da++ +n+rLe+e  +L+e+l+e
     EMT20928  62 KKRRLSDEQAQFLEMSFRKERKLETPRKVQLAAELGLDTKQVAVWFQTRRARYKSKLIEEEFSKLRAAHDAVVVHNCRLEAELLRLKERLAE 153
                  9**************************************************************************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.87257117IPR001356Homeobox domain
SMARTSM003891.3E-1460121IPR001356Homeobox domain
SuperFamilySSF466891.23E-1561124IPR009057Homeodomain-like
CDDcd000864.33E-1362117No hitNo description
PfamPF000466.0E-1562115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.2E-1568115IPR009057Homeodomain-like
PRINTSPR000314.2E-58897IPR000047Helix-turn-helix motif
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PRINTSPR000314.2E-597113IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MSPEEGERLL FPSFVFPDSF PADDATPVVS GGEQKKAGRQ RRRRRARQAA AGEGAGGDDA  60
AKKRRLSDEQ AQFLEMSFRK ERKLETPRKV QLAAELGLDT KQVAVWFQTR RARYKSKLIE  120
EEFSKLRAAH DAVVVHNCRL EAELLRLKER LAETEEEKNK AMAAAAATAG GGGGSSPSSS  180
SFSTVTAMVG GQQFGMEEVE TDLTYMSEYA YTNYMMDLAA GGYLGVGGVY DQFS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14264RRRARQAAAGEGAGGDDAAKKRR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3652950.0AK365295.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2033D08.
GenBankAK3702530.0AK370253.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2107J20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157992.11e-170homeobox-leucine zipper protein HOX12-like
SwissprotA2XDK56e-81HOX12_ORYSI; Homeobox-leucine zipper protein HOX12
SwissprotQ10QF25e-81HOX12_ORYSJ; Homeobox-leucine zipper protein HOX12
TrEMBLM8BGR61e-169M8BGR6_AEGTA; Homeobox-leucine zipper protein HOX12
STRINGEMT209281e-170(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.12e-27homeobox protein 40
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Gao S,Fang J,Xu F,Wang W,Chu C
    Rice HOX12 Regulates Panicle Exsertion by Directly Modulating the Expression of ELONGATED UPPERMOST INTERNODE1.
    Plant Cell, 2016. 28(3): p. 680-95
    [PMID:26977084]