PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21045
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HSF
Protein Properties Length: 172aa    MW: 18583.4 Da    PI: 10.6187
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21045genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind60.15.7e-193794260
                  HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT CS
  HSF_DNA-bind  2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY 60
                  Fl+k+y++++++ l+ +isw   g+sfvv+++++fa +vL + Fkh nf+SFvRQLn+Y
      EMT21045 37 FLSKTYDLVSEPWLDGVISWGPAGKSFVVWNPSTFALDVLLHNFKH-NFSSFVRQLNTY 94
                  9********************************************9.7**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004153.5E-1633115IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-193495IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.9E-173594IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.2E-153794IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-53760IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.1E-58799IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MAEPKIYISC SSPDPAAARA GGALRAAAAL VVLRPPFLSK TYDLVSEPWL DGVISWGPAG  60
KSFVVWNPST FALDVLLHNF KHNFSSFVRQ LNTYVRIPLT TTRGGRPWME IARARSAAAV  120
GCSKEHQRIC VDWFALADPG RPARNVLQTG KSPLLEGANQ ANKKGSPANK VA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM4460283e-66HM446028.1 Hordeum vulgare subsp. vulgare heat shock factor A3 (HsfA3) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020146599.16e-30heat stress transcription factor A-3-like
TrEMBLM8B8C71e-123M8B8C7_AEGTA; Uncharacterized protein
STRINGEMT210451e-124(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP4972322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.19e-21heat shock transcription factor A3