PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21047
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SBP
Protein Properties Length: 165aa    MW: 16780.6 Da    PI: 8.6104
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21047genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP70.14.2e-2281128148
               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSS CS
       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsr 48 
               +CqvegC +dls  k+y+ rhkvC  hskap v+v+g+eqrfCqqCsr
  EMT21047  81 RCQVEGCGVDLSGGKTYYCRHKVCLEHSKAPLVVVAGIEQRFCQQCSR 128
               6**********************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.1E-2375128IPR004333Transcription factor, SBP-box
PROSITE profilePS5114117.29879152IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-2180128IPR004333Transcription factor, SBP-box
PfamPF031101.6E-1882129IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
METGGSGGGD GGGRRPGDDL HGLNFGQKIY FEQDVAGSSS SGGRKGKGPA PARAGGGGGG  60
GGSGASTPAA GGNASQSQQP RCQVEGCGVD LSGGKTYYCR HKVCLEHSKA PLVVVAGIEQ  120
RFCQQCSRKE RNSQVMTHGG VESDENSKGQ KVVQPEILVR VAHIL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj0_A2e-1382128652squamosa promoter-binding protein-like 12
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1071912e-42AK107191.1 Oryza sativa Japonica Group cDNA clone:002-125-A04, full insert sequence.
GenBankAP0058162e-42AP005816.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:B1168A08.
GenBankAP0060492e-42AP006049.2 Oryza sativa Japonica Group genomic DNA, chromosome 8, BAC clone:OSJNBa0016N23.
GenBankAP0149642e-42AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankGU1366742e-42GU136674.1 Oryza sativa Japonica Group IPA1 (IPA1) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020188000.14e-84squamosa promoter-binding-like protein 17 isoform X1
RefseqXP_020188001.14e-84squamosa promoter-binding-like protein 17 isoform X2
SwissprotA3C0571e-27SPL17_ORYSJ; Squamosa promoter-binding-like protein 17
TrEMBLM8C1V11e-113M8C1V1_AEGTA; Squamosa promoter-binding-like protein 17
STRINGEMT210471e-114(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2518055
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.13e-21squamosa promoter binding protein-like 9