PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21303
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 288aa    MW: 31517.2 Da    PI: 6.32
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21303genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.91.7e-18120173356
               --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               k++++t+eq e Le  F+++r++ + ++  LA++lgL+ +qV vWFqNrRa++k
  EMT21303 120 KKRRLTDEQAEMLELSFREERKLETGRKVYLAAELGLDPKQVAVWFQNRRARHK 173
               45689***********************************************99 PP
2HD-ZIP_I/II104.68e-34120204286
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                  kkrrl++eq+++LE sF+ee+kLe+ rKv la eLgl+p+qvavWFqnrRAR+k+k lE+++++Lk+a+da   ++++Le+e ++
     EMT21303 120 KKRRLTDEQAEMLELSFREERKLETGRKVYLAAELGLDPKQVAVWFQNRRARHKSKTLEQEFARLKHAHDADILHKCHLENELTD 204
                  9*******************************************************************************99764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-16114175IPR009057Homeodomain-like
PROSITE profilePS5007115.937115175IPR001356Homeobox domain
SMARTSM003894.2E-16118179IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.8E-17120173IPR009057Homeodomain-like
PfamPF000466.5E-16120173IPR001356Homeobox domain
CDDcd000861.92E-14120175No hitNo description
PRINTSPR000314.0E-5146155IPR000047Helix-turn-helix motif
PROSITE patternPS000270150173IPR017970Homeobox, conserved site
PRINTSPR000314.0E-5155171IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSRRMDTLSS SSSGSRSSGS APVELLPVKP EPQETPLRQR SRSGNLAINE GVLVPSPPAA  60
TSAWGQANPS KKPKLNKLVN DPNLSEPKKQ QPESSHPISE NIVDDLEGNG GEMDEGGDPK  120
KRRLTDEQAE MLELSFREER KLETGRKVYL AAELGLDPKQ VAVWFQNRRA RHKSKTLEQE  180
FARLKHAHDA DILHKCHLEN ELTDTQLLRL KEKLRATEEE VQRLRSAAGC HGASADGGDS  240
AGAVSVCGGS PGSFFSTGTC QQHPGFSGAD VLRPDDDLMM CVPEWFFA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00591DAPTransfer from AT5G66700Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2597830.0AB259783.1 Hordeum vulgare subsp. vulgare Vrs1 mRNA for homeodomain leucine zipper protein Vrs1, complete cds, allele: Vrs1.b.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020176255.11e-124homeobox-leucine zipper protein HOX14-like
TrEMBLM8BHU00.0M8BHU0_AEGTA; Homeobox-leucine zipper protein HOX14
STRINGEMT213030.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP200638101
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.19e-35homeobox protein 40