PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21390
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 218aa    MW: 23702 Da    PI: 9.7516
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21390genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.91.5e-174195256
              T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
              rk+ +++k+q  +Lee+F+++++++ ++++ LA++lgL  rq  vWFqNrRa+ k
  EMT21390 41 RKKLRLSKDQAAVLEECFKMHSTLNPKQKTALANRLGLRPRQGEVWFQNRRARTK 95
              778899***********************************************98 PP
2HD-ZIP_I/II120.96.3e-3941130191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEe+F+++++L+p++K++la++Lgl+prq +vWFqnrRARtk+kq+E+d+e++kr++++l+e+n+rLekev+eLr +l
     EMT21390  41 RKKLRLSKDQAAVLEECFKMHSTLNPKQKTALANRLGLRPRQGEVWFQNRRARTKLKQTEVDCEHMKRWCEHLAEQNCRLEKEVAELR-AL 130
                  69*************************************************************************************9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.42E-163598IPR009057Homeodomain-like
PROSITE profilePS5007115.5163797IPR001356Homeobox domain
SMARTSM003899.9E-1339101IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-154195IPR009057Homeodomain-like
CDDcd000864.37E-144198No hitNo description
PfamPF000467.2E-154195IPR001356Homeobox domain
PfamPF021831.4E-897130IPR003106Leucine zipper, homeobox-associated
SMARTSM003403.6E-1797140IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MRTSTSPESG VSGGIKRGLE RTGSGVFPAA GSDEDEDGGD RKKLRLSKDQ AAVLEECFKM  60
HSTLNPKQKT ALANRLGLRP RQGEVWFQNR RARTKLKQTE VDCEHMKRWC EHLAEQNCRL  120
EKEVAELRAL NAAPPAHSGA ATGPLTTLTM CLSCKRVASS SSASACNVPS FSANSGIGMP  180
MPTPVALPEH RQFFCRFRDT EVTYGGSSGL VKVVKPAR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18997RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3581090.0AK358109.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1068P22.
GenBankAK3590600.0AK359060.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1088I06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170043.11e-160homeobox-leucine zipper protein HOX2-like
SwissprotA2Y9317e-56HOX28_ORYSI; Homeobox-leucine zipper protein HOX28
SwissprotQ5VPE57e-56HOX28_ORYSJ; Homeobox-leucine zipper protein HOX28
TrEMBLM8B9A41e-160M8B9A4_AEGTA; Homeobox-leucine zipper protein HOX28
STRINGEMT213901e-161(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38423376
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.13e-50homeobox from Arabidopsis thaliana
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]