PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT21447
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family AP2
Protein Properties Length: 212aa    MW: 22736.8 Da    PI: 7.2197
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT21447genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.33.4e-07726222
       AP2  2 gykGVrwdkkrgrWvAeIrdp 22
              +y+GVr+++ +g+Wv+eIr+p
  EMT21447  7 RYRGVRQRH-WGSWVSEIRHP 26
              69******9.*********96 PP
2AP235.42.7e-1154981455
       AP2 14 r.WvAeIrdpse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55
              r W+  Ir   + +g +++r++lg+f tae+Aa+a+++a++ + g
  EMT21447 54 RwWLTVIRTDGDdGGcRKTRIWLGTFETAEDAARAYDEAARIMCG 98
              559999999445255677**********************97765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.09E-236106No hitNo description
PROSITE profilePS5103220.1527106IPR001471AP2/ERF domain
SMARTSM003803.9E-337112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-33728IPR001471AP2/ERF domain
PRINTSPR003673.6E-11819IPR001471AP2/ERF domain
PfamPF008474.4E-65696IPR001471AP2/ERF domain
SuperFamilySSF541713.2E-1268107IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.3E-3370107IPR001471AP2/ERF domain
PRINTSPR003673.6E-117288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLCV PTYLAMHACD FVDLSDALTV ILGRWWLTVI  60
RTDGDDGGCR KTRIWLGTFE TAEDAARAYD EAARIMCGQR ARTNFPAVAA AGSVSSSSSA  120
AVASSFLSAA LVAKLHRFNM ASVQAAHRQR EAAAAAASAA AATAAAMPPG GAHAGPTLPS  180
STGWVGTLLE EQHVEQMIAE LLDSDFSMEI CH
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3572021e-135AK357202.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1048C12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020164328.11e-110ethylene-responsive transcription factor ERF003-like isoform X2
TrEMBLM8C2Z91e-152M8C2Z9_AEGTA; Ethylene-responsive transcription factor ERF003
STRINGEMT214471e-153(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-22ERF family protein