PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT21501

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Protein Properties

Length: 312aa MW: 34592.6 Da PI: 7.4104

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT21501	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	88	7.5e-28	37	146	1	98
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS..SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr..se 89 f+k+ltpsdv+k++rlv+pk++ae++ g + e++ l++ de g + W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ ++ EMT21501 37 FEKALTPSDVGKLNRLVIPKQHAERCfplgGDSGEKGLLLSFDDEAGepwragKPWRFRYSYWTSSQSYVLTKGWSRYVKEKHLEAGDVVHFERVRGlgTG 137 99*************************9555568889****************************************************88655455 PP E..EEEEE- CS B3 90 felvvkvfr 98 +l+++ +r EMT21501 138 DRLFIGCRR 146 556666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.4E-37	32	155	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.2E-25	34	133	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.04E-25	35	133	No hit	No description
SMART	SM01019	2.4E-17	37	147	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.211	37	147	IPR003340	B3 DNA binding domain
Pfam	PF02362	7.4E-25	37	147	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0080113	Biological Process	regulation of seed growth
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 312 aa Download sequence Send to blast
MAMNPLSQEH PNAWPWGVAM YTNLHYQQYH YEKEHLFEKA LTPSDVGKLN RLVIPKQHAE 60 RCFPLGGDSG EKGLLLSFDD EAGEPWRAGK PWRFRYSYWT SSQSYVLTKG WSRYVKEKHL 120 EAGDVVHFER VRGLGTGDRL FIGCRRRGDV GASTAVAPPP AVRVVPASGQ SPREQQQHQQ 180 PWSPMCYSTS TSYPTSPATS HAYRRSAEHD HSDMHHAGES QWDADTRSCS PASAPTRQLR 240 LFGVNLDCGP EPEAEAAPAT PAMYGYVHQS PYAAVSPVPS NCSTVVELMQ SIGGGVTAFT 300 FAINRLNAFT PT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	9e-48	32	151	3	117	B3 domain-containing transcription factor NGA1
5os9_B	9e-48	32	151	3	117	B3 domain-containing transcription factor NGA1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375277	1e-132	AK375277.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3089K07.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020174894.1	0.0	B3 domain-containing protein Os11g0156000-like
Swissprot	Q53QI0	1e-122	Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBL	M8CEA1	0.0	M8CEA1_AEGTA; B3 domain-containing protein
STRING	EMT21501	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2446	38	89

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36080.2	3e-50	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]