PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT22068
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family YABBY
Protein Properties Length: 210aa    MW: 21923.7 Da    PI: 8.7095
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT22068genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY47.28.9e-154072436
     YABBY  4 fssseqvCyvqCnfCntilavsvPstslfkvvt 36
                 seq+Cyv+C fC+t+l+vsvPs+slfk+vt
  EMT22068 40 EAPSEQLCYVHCHFCDTVLVVSVPSSSLFKTVT 72
              5689****************************9 PP
2YABBY31.84.8e-10116139116139
     YABBY 116 irPPekrqrvPsaynrfikeeiqr 139
                + PekrqrvPsaynrfik+   r
  EMT22068 116 GKAPEKRQRVPSAYNRFIKQAAGR 139
               589****************87666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.7E-124272IPR006780YABBY protein
PfamPF046902.3E-7116139IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MSSSSSSGAS AAFTPVSQQQ QMASESLSSE LQPPAPMQPE APSEQLCYVH CHFCDTVLVV  60
SVPSSSLFKT VTDEISSANP SLQLLEQHGL GGLVAAAGGR NAAAPAPLPP PPVAGGKAPE  120
KRQRVPSAYN RFIKQAAGRG RGSGPGRQSC TRSRVIHPRQ PWPAGLHCYI HPGNVRDPEA  180
SSPFGRANCV PGHRAVSSVC LRLATPEESS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3302289e-98AY330228.1 Triticum aestivum YABBY protein (YAB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020178920.11e-33protein YABBY 3-like
SwissprotQ2QM176e-15YAB6_ORYSJ; Protein YABBY 6
TrEMBLM8BJU81e-148M8BJU8_AEGTA; Uncharacterized protein
STRINGEMT220681e-149(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144538121