PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT22079
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB_related
Protein Properties Length: 219aa    MW: 24320.9 Da    PI: 10.3086
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT22079genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.92.3e-08534130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +++WT+eE+  l+ ++ ++G g W+tI + 
         EMT22079  5 KQKWTAEEEAALKAGIGKHGAGKWRTILKD 34
                     79*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.102159IPR017930Myb domain
SuperFamilySSF466891.64E-10259IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-9452IPR009057Homeodomain-like
PfamPF002491.2E-5534IPR001005SANT/Myb domain
CDDcd116602.27E-13686No hitNo description
PROSITE profilePS5150417.92153219IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467855.44E-11154215IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005264.2E-5154219IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.105.3E-12158215IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005383.1E-7161216IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005730Cellular Componentnucleolus
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
GO:0033613Molecular Functionactivating transcription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0070491Molecular Functionrepressing transcription factor binding
GO:1990841Molecular Functionpromoter-specific chromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MGAPKQKWTA EEEAALKAGI GKHGAGKWRT ILKDPEFSNI LRCRSNVDLK VRSCVRFLGC  60
QTMRASTRLE TLMTVERLQD KWRNMNVTVN ASGTRDKVRT TTTTTPTAKK PRSAPKQESH  120
STAITTITSD GDDDVIDVKP IIKPIVTFTT GSGNKSLSRL ENIILEAVKT LNEPTGSYKT  180
AVANYIEEQY WPPADFDHVL SAKLNELTSS GKLMKIIKR
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00607ChIP-seqTransfer from AT1G49950Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2495641e-166AK249564.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf43k23, mRNA sequence.
GenBankAK3763021e-166AK376302.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv3120E05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020159514.11e-123single myb histone 5-like
SwissprotC0HIA37e-74SMH6_MAIZE; Single myb histone 6
TrEMBLA0A453JMP51e-160A0A453JMP5_AEGTS; Uncharacterized protein
TrEMBLM8BJD71e-161M8BJD7_AEGTA; Uncharacterized protein
STRINGEMT220791e-161(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.35e-45telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]