PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT22195
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family LSD
Protein Properties Length: 197aa    MW: 20903.4 Da    PI: 8.8166
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT22195genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD140.35e-13731125
   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
              C+gCr +L YPrGApsV+Ca+C++V
  EMT22195  7 CHGCRSVLLYPRGAPSVCCAVCHAV 31
              ************************9 PP
2zf-LSD142.41.1e-134670125
   zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
              C gCrtlL+Y+r+A+ VRC++CdtV
  EMT22195 46 CVGCRTLLMYTRNATTVRCSCCDTV 70
              ************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010535.5E-12432IPR005735Zinc finger, LSD1-type
PfamPF069431.5E-10731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.3E-134372IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-104670IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006914Biological Processautophagy
GO:0009626Biological Processplant-type hypersensitive response
GO:0009651Biological Processresponse to salt stress
GO:0009733Biological Processresponse to auxin
GO:0009743Biological Processresponse to carbohydrate
GO:0009863Biological Processsalicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043067Biological Processregulation of programmed cell death
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MQSQIVCHGC RSVLLYPRGA PSVCCAVCHA VTNAPPPGME MAQLICVGCR TLLMYTRNAT  60
TVRCSCCDTV NLARPAPPGV ARLTETSYGL KLADFLMNTV RPLPPTMHAP NGISYSVPST  120
SAPSTQSQNV TVVVENPMTV DDKGKLVSRL CALLPSANRS ARVFALPSEP IPRCSHYPLT  180
FSQVSNVVVG VTSGGKK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1355801e-121JX135580.1 Triticum aestivum cultivar Suwon11 LOL2 (LOL2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020198652.17e-86protein LOL2-like
SwissprotQ2QMB31e-63LOL2_ORYSJ; Protein LOL2
TrEMBLM8BBF61e-140M8BBF6_AEGTA; Uncharacterized protein
STRINGEMT221951e-141(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.16e-34lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]