PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT22297

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

LBD

Protein Properties

Length: 251aa MW: 25920.1 Da PI: 7.7804

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT22297	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	139.8	9.3e-44	21	119	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC++dCv+apyfp ++p+kf vh++FGasnv+kll++l++ +reda++sl+yeA++r+rdPvyG+vgvi+ lq+ql+ql+++l +++ EMT22297 21 PCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELNPYQREDAVNSLAYEADMRLRDPVYGCVGVISVLQHQLRQLQQDLTRARY 119 7********************************************************************************************998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.842	20	121	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	7.0E-44	21	117	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MASSAAAVGA ASSGAAGTGS PCAACKFLRR KCQPDCVFAP YFPPDNPQKF VHVHRVFGAS 60 NVTKLLNELN PYQREDAVNS LAYEADMRLR DPVYGCVGVI SVLQHQLRQL QQDLTRARYE 120 LSKYQAAAAV AVSASVGCNG TPAMADFIGN TVPNCTQNFI NISHSTAIGA GLGFGHDQFA 180 AVQMLARSYE GEGAVARLGV LGVNGGSSGG YDFGYTSAMG AGPVSGLGPL SGGPFLKPGT 240 AGGDERHTAA Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-55	11	124	1	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-55	11	124	1	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes. {ECO:0000269\|PubMed:17209126}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134933	1e-132	AC134933.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone P0579A05, complete sequence.
GenBank	AC137617	1e-132	AC137617.3 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0084P24, complete sequence.
GenBank	AP014961	1e-132	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187374.1	1e-147	LOB domain-containing protein 6-like
Refseq	XP_020194956.1	1e-147	LOB domain-containing protein 6-like
Swissprot	Q32SG3	1e-113	LBD6_MAIZE; LOB domain-containing protein 6
TrEMBL	M8C5M1	0.0	M8C5M1_AEGTA; Uncharacterized protein
STRING	EMT22297	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2267	38	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65620.4	3e-51	LBD family protein