PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT23005
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 239aa    MW: 26934.4 Da    PI: 10.4709
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT23005genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B388.64.9e-2836127186
               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
               f+k ltpsdv+k++rlv+pk++ae++      +++ e++  l++ede g+ W+++++y+ +s++yvltkGW+++vk+++L++g +v F++++
  EMT23005  36 FEKPLTPSDVGKLNRLVIPKQHAERYfplnggDSPGEKDLLLSFEDEAGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKQLDAGHIVHFERVR 127
               99****************************87445557778999*********************************************765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.6E-3730130IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-2733128IPR015300DNA-binding pseudobarrel domain
CDDcd100178.45E-2734128No hitNo description
PROSITE profilePS5086312.46436143IPR003340B3 DNA binding domain
SMARTSM010198.9E-2036134IPR003340B3 DNA binding domain
PfamPF023622.7E-2536127IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MAMHPLSQGH PQAWPWGVAM YTNLHYHHQY EREHLFEKPL TPSDVGKLNR LVIPKQHAER  60
YFPLNGGDSP GEKDLLLSFE DEAGKPWRFR YSYWTSSQSY VLTKGWSRYV KEKQLDAGHI  120
VHFERVRGLG TGDRLSVAQA TGSSSAAGVV ARARRHHLRV AERGGRQEQH GIGAAVETSP  180
AVRRQPRLRS GARGRGNNAN VRLHPPEPLR CSGHGAKLLG QFIKMMRSEA ILEDPDNQQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A2e-4631128398B3 domain-containing transcription factor NGA1
5os9_B2e-4631128398B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185469.11e-96B3 domain-containing protein Os11g0156000-like
SwissprotQ53QI05e-67Y1160_ORYSJ; B3 domain-containing protein Os11g0156000
TrEMBLM8BDK11e-176M8BDK1_AEGTA; B3 domain-containing protein
STRINGEMT230051e-177(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24463889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.22e-48B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]