PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT23156

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Dof

Protein Properties

Length: 284aa MW: 29376.7 Da PI: 7.1759

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT23156	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	95.9	2.8e-30	130	176	2	48
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrn 48 keka++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn EMT23156 130 KEKAINCPRCNSTNTKFCYYNNYSLQQPRYFCKTCRRYWTEGGSLRN 176 7899******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	123	177	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-26	132	176	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	23.179	134	188	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	136	172	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MEQLDPAAVM IIRIICVRMF KGLAAQMKTT EKDVADEEGL VTGLLYYCYA FEMKEVESKP 60 GLGLVKPMEE MIMAGNPNPN PNPNGNPNPQ PAPPSGAEAQ RAPVPGPPAG GAGAAAGTGS 120 TERKAARPQK EKAINCPRCN STNTKFCYYN NYSLQQPRYF CKTCRRYWTE GGSLRNARQQ 180 QVQNMLGFSL DTGGGGDAGG YGAGLQGAQE SATGRMLFPF EDLKPGTNAG GGGASGGDQV 240 EHSKAQGGGG GGGHETLGFW NNSMIGNGSS NDAGGGGGGG GGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ276357	1e-147	AJ276357.1 Hordeum vulgare mRNA for dof zinc finger protein (sed gene).
GenBank	AJ312297	1e-147	AJ312297.1 Hordeum vulgare sed gene for dof zinc finger protein, exons 1-2.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020164856.1	4e-42	dof zinc finger protein DOF4.6-like isoform X1
Swissprot	B9F1L8	7e-39	DOF2_ORYSJ; Dof zinc finger protein 2
TrEMBL	M8CIP2	0.0	M8CIP2_AEGTA; Dof zinc finger protein
STRING	EMT23156	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	6e-30	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]