PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT23460
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family MYB
Protein Properties Length: 225aa    MW: 24383.4 Da    PI: 9.9876
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT23460genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.74.8e-17855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT  Ede l+ +vk +G g+W+ ++++ g++R++k+c++rw++yl
         EMT23460  8 RGAWTGKEDETLASYVKAHGEGRWNEVPQRAGLRRCGKSCRLRWLNYL 55
                     89********************************************97 PP
2Myb_DNA-binding47.93.1e-1561105147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E++ +v+++++lG++ W++Ia +++ gRt++++k++w++ 
         EMT23460  61 RGNISNDEEDTIVRLHALLGNR-WSLIAGRLP-GRTDNEIKNYWNST 105
                      78899*****************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.781355IPR017930Myb domain
SuperFamilySSF466894.69E-285102IPR009057Homeodomain-like
SMARTSM007174.9E-13757IPR001005SANT/Myb domain
PfamPF002496.8E-16855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-23962IPR009057Homeodomain-like
CDDcd001671.07E-101055No hitNo description
PROSITE profilePS5129423.77656110IPR017930Myb domain
SMARTSM007171.0E-1360108IPR001005SANT/Myb domain
PfamPF002491.7E-1361105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.3E-2363109IPR009057Homeodomain-like
CDDcd001676.28E-1165106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MATEGVKRGA WTGKEDETLA SYVKAHGEGR WNEVPQRAGL RRCGKSCRLR WLNYLRPNIK  60
RGNISNDEED TIVRLHALLG NRWSLIAGRL PGRTDNEIKN YWNSTLGRKV LPAPHSATRM  120
VATPDTSAGS GSYTEASASL SSSGPGTSDK AATPSPLPAT LWAPKPVRHT GHPFFLRDRP  180
PPLPVAETRT VANGDACSGS SSVTSEFPAV PPSLGSDDWM HEKTM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-2581107108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtControls the expression of genes involved in anthocyanin biosynthesis. Regulates the expression of at least 3 structural genes: chalcone synthase, dihydroflavonol reductase and flavonol O(3) glucosyltransferase. C1 acts as a trans-acting factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2521461e-108AB252146.1 Triticum aestivum Tamyb3 mRNA for myb-related protein, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020154992.11e-162transcription factor MYB114-like
SwissprotP102903e-70MYBC_MAIZE; Anthocyanin regulatory C1 protein
TrEMBLM8BEU81e-163M8BEU8_AEGTA; Uncharacterized protein
STRINGEMT234601e-164(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP11637448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.12e-55myb domain protein 5
Publications ? help Back to Top
  1. Chen B,Wang X,Hu Y,Wang Y,Lin Z
    Ectopic expression of a c1-I allele from maize inhibits pigment formation in the flower of transgenic tobacco.
    Mol. Biotechnol., 2004. 26(3): p. 187-92
    [PMID:15004287]
  2. Paz-Ares J,Ghosal D,Saedler H
    Molecular analysis of the C1-I allele from Zea mays: a dominant mutant of the regulatory C1 locus.
    EMBO J., 1990. 9(2): p. 315-21
    [PMID:2303027]
  3. Cone KC,Burr FA,Burr B
    Molecular analysis of the maize anthocyanin regulatory locus C1.
    Proc. Natl. Acad. Sci. U.S.A., 1986. 83(24): p. 9631-5
    [PMID:3025847]
  4. Paz-Ares J,Ghosal D,Wienand U,Peterson PA,Saedler H
    The regulatory c1 locus of Zea mays encodes a protein with homology to myb proto-oncogene products and with structural similarities to transcriptional activators.
    EMBO J., 1987. 6(12): p. 3553-8
    [PMID:3428265]
  5. Scheffler B, et al.
    Molecular analysis of C1 alleles in Zea mays defines regions involved in the expression of this regulatory gene.
    Mol. Gen. Genet., 1994. 242(1): p. 40-8
    [PMID:7904044]
  6. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]
  7. Singer T,Gierl A,Peterson PA
    Three new dominant C1 suppressor alleles in Zea mays.
    Genet. Res., 1998. 71(2): p. 127-32
    [PMID:9717435]