PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT23477
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 220aa    MW: 23404 Da    PI: 7.3021
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT23477genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000285274123
              EEETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
              ++C++C + F ++  L  H++ H
  EMT23477 52 FSCNYCQRKFFSSQALGGHQNAH 74
              89*****************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.0E-44378IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.27E-64879No hitNo description
PROSITE profilePS5015711.5525279IPR007087Zinc finger, C2H2
PROSITE patternPS0002805474IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MEGEGETPYQ LLSNRISLDL RLDAMTHHRR TRRPASPAPA DYQQQHHGKE AFSCNYCQRK  60
FFSSQALGGH QNAHKNERAL ADRTLAKRRR DASAGINAAV AATPSSPAVI HSWLHGGGDL  120
WAYATSPASS MGMGGLAGTR RTTTAAGEDT AELDLSLTAG STTVAHSWIN GGGDIWAYAT  180
SPPTSLSMGM GMDGWDGTRL TTTVGGETTA EMDLSLKLCL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158269.11e-100zinc finger protein 4-like
TrEMBLM8C8V31e-160M8C8V3_AEGTA; Zinc finger protein 4
STRINGEMT234771e-161(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G24625.11e-15zinc finger protein 7