PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT23605
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family TCP
Protein Properties Length: 227aa    MW: 25214.4 Da    PI: 10.156
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT23605genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP98.31.4e-3049118372
       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssase 72 
               g+kdrhsk+ T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++a p+i++l+ +++++++ 
  EMT23605  49 GGKDRHSKVKTVKGLRDRRVRLSVQTAIQLYDLQDRLGLNQPSKVVDWLLNAARPQIDKLPPLQFPPHQV 118
               78*************************************************************9999932 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5136929.47950108IPR017887Transcription factor TCP subgroup
PfamPF036343.0E-2850120IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MMRGNNQQQQ SAAEEEQELA RKHAAAVATS RQWSSQTESR IVRVSRVFGG KDRHSKVKTV  60
KGLRDRRVRL SVQTAIQLYD LQDRLGLNQP SKVVDWLLNA ARPQIDKLPP LQFPPHQVDL  120
MDHMMTSSSM PLMPHVDDKF CHFASTLAGD GGVKAGADAD GGGAHHNMGR FGYHRFMGLN  180
NNLGLVNSGI PYNFTGESWN NSSVHQSGGA GSAQIYFFLW DKPNRAF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2055109155Putative transcription factor PCF6
5zkt_B1e-2055109155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168249.11e-157uncharacterized protein LOC109753738
TrEMBLM8BF861e-169M8BF86_AEGTA; Uncharacterized protein
STRINGEMT236051e-170(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24903584
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.12e-39TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5