PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT23824
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 273aa    MW: 29492.3 Da    PI: 6.5128
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT23824genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.28.3e-10115145131
               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC. CS
       HLH   1 rrrahnerErrRRdriNsafeeLrellPkas 31 
               +r++h ++Er+RR+++N+ +  Lr+l+P ++
  EMT23824 115 QRMTHIAVERNRRKQMNEYLGVLRSLMPASY 145
               79**************************964 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.45E-9108159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.64E-7113157No hitNo description
Gene3DG3DSA:4.10.280.101.8E-8113146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.141114165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-7115145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MALEAVVFSK GFFGRCAMAA EGVGGGGGVW GGNGHGHGGG MELDGSNAHC GAAVASTEAP  60
EGSSSLPALP PPGHGSDPGG ADDGAVDAAS ASGAAGRRKR RRARSVKNIE EAESQRMTHI  120
AVERNRRKQM NEYLGVLRSL MPASYVHRGP RLAVLHLTAT SAGHMALYCL SLKVEDDCRL  180
SSVADIAAAV HRILETIERE EEEERRQQQS YPEHGMDESI FLAGESREQE KVPFSPVFYR  240
YKLYMRLQAQ FEMVFGLENI VKDKEILLNV IVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101RKRRR
2115126RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1076267e-53AK107626.1 Oryza sativa Japonica Group cDNA clone:002-131-D10, full insert sequence.
GenBankHQ8588617e-53HQ858861.1 Oryza sativa Japonica Group isolate UT1670 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020156069.15e-71transcription factor bHLH94-like
TrEMBLM8BPF10.0M8BPF1_AEGTA; Transcription factor FAMA
STRINGEMT238240.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104622843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.12e-18bHLH family protein