PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24216
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GATA
Protein Properties Length: 231aa    MW: 24613.3 Da    PI: 10.3042
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24216genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.94.9e-17139176136
      GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkglk 36 
               C++Cg ++  Tp++Rrgpdg++tLCnaCGl ++ kg++
  EMT24216 139 CQHCGISSnnTPMMRRGPDGPRTLCNACGLAWANKGMM 176
               *****99889*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062031.3E-1769111IPR010402CCT domain
PROSITE profilePS5101713.53369111IPR010402CCT domain
SMARTSM004015.3E-12133186IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.62E-11137180No hitNo description
Gene3DG3DSA:3.30.50.102.8E-15138179IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.00E-12138177No hitNo description
PfamPF003202.6E-14139174IPR000679Zinc finger, GATA-type
PROSITE patternPS003440139166IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MGVLVCLPGV ASAATERLLL MGIRYGAACL LRDKVQAVLL LLGGRELGPG MGVGPSSSAS  60
YSKRLNSHRM ASLMRFREKR KERNFDKKIR YSVRKEVAHR MQRHKGQFTS SKAKAEEAAA  120
AANSDWGAVE GRPLSAPVCQ HCGISSNNTP MMRRGPDGPR TLCNACGLAW ANKGMMREVK  180
GHTPLKVVPP ATDDAQNGVA EAPTAEQQHL ALEAAPEAPV APAPAANGHD S
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3588960.0AK358896.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1085G16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020166796.11e-144GATA transcription factor 17-like isoform X1
SwissprotQ6Z4332e-83GAT17_ORYSJ; GATA transcription factor 17
TrEMBLM8CLC91e-169M8CLC9_AEGTA; GATA transcription factor 27
STRINGEMT242161e-170(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43253868
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.18e-47ZIM-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]