PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24406
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GATA
Protein Properties Length: 50aa    MW: 5185.72 Da    PI: 4.3496
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24406genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA31.32.9e-102746120
      GATA  1 CsnCgttkTplWRrgpdgnk 20
              C  C+ttkTplWR gp+g+k
  EMT24406 27 CDDCNTTKTPLWRGGPNGPK 46
              99****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.66E-52045No hitNo description
PROSITE profilePS501149.172144IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.1E-72544IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-72746IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 50 aa     Download sequence    Send to blast
MSPAEMVQVE AAADPEERAA SGDPKACDDC NTTKTPLWRG GPNGPKGKAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703062e-42HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020158673.12e-26GATA transcription factor 15-like
TrEMBLM8CLT78e-28M8CLT7_AEGTA; Uncharacterized protein
STRINGEMT244061e-28(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26150.14e-09cytokinin-responsive gata factor 1