PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT24975
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HSF
Protein Properties Length: 251aa    MW: 28430.4 Da    PI: 10.2238
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT24975genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind99.33.7e-31191112103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   F+ k++++++d++++ ++ w   +n+f+vld+  f++ +Lp+yFkh+nfaSFvRQLn+YgF+kv+ +          weF+h+sF +g+ +ll  i 
      EMT24975  19 FVAKTFHMVSDPATDAVVCWGGASNTFLVLDPAAFSDFLLPSYFKHRNFASFVRQLNTYGFRKVDPDV---------WEFAHESFLRGQAKLLPLIV 106
                   9********************999****************************************9877.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   rkk++
      EMT24975 107 RKKKR 111
                   *9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.4E-3411102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.4E-4715108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-3115108IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.8E-2719108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-171942IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-175769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.7E-177082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006970Biological Processresponse to osmotic stress
GO:0009737Biological Processresponse to abscisic acid
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGSECKGHQP QDDGGVAPFV AKTFHMVSDP ATDAVVCWGG ASNTFLVLDP AAFSDFLLPS  60
YFKHRNFASF VRQLNTYGFR KVDPDVWEFA HESFLRGQAK LLPLIVRKKK RAGAGAAGRE  120
LCEEEEEVRG TIQAVQRLRD ERRGMEEELQ AMDRRLRAAE NRPGQMMAFL ASSRTTRAWC  180
YAPWSPRRRS WLRPAPVASI QARIRGGGSG PTPDAELTLR IRRPRAGPCR SPYLIWDRCS  240
TDRPWEPRVD R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-251510816120Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085520.0KF208552.1 Triticum aestivum heat shock factor C1b (HsfC1b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179067.11e-122heat stress transcription factor C-1b-like
SwissprotQ942D61e-99HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLM8BIZ30.0M8BIZ3_AEGTA; Heat stress transcription factor C-1b
STRINGEMT249750.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.12e-51heat shock transcription factor C1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Schmidt R, et al.
    Transcription factor OsHsfC1b regulates salt tolerance and development in Oryza sativa ssp. japonica.
    AoB Plants, 2012. 2012: p. pls011
    [PMID:22616023]