PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT24994

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

WRKY

Protein Properties

Length: 331aa MW: 36062.8 Da PI: 10.6472

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT24994	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.3	1.2e-31	265	322	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp+++++tYegeHnh+ EMT24994 265 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPSMLIVTYEGEHNHT 322 9***********************988**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF10533	1.6E-19	216	261	IPR018872	Zn-cluster domain
Gene3D	G3DSA:2.20.25.80	3.5E-34	251	322	IPR003657	WRKY domain
PROSITE profile	PS50811	30.297	258	324	IPR003657	WRKY domain
SuperFamily	SSF118290	2.48E-27	261	322	IPR003657	WRKY domain
SMART	SM00774	2.6E-38	263	323	IPR003657	WRKY domain
Pfam	PF03106	2.3E-27	265	321	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005516	Molecular Function	calmodulin binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MAVASCHRVL GLLAQTQDPA QLRSIALGTD EACAKFRKVV SLLGNGNEGG GTHPRAKLVS 60 RRQTPGFLSQ KSFLDNNTPV VVLNSAHPST SSAQVYPRNS SILDSQPAHP IGGPPKLVQP 120 LSAHFQFGDS SRYNQFQQHQ HQQQKMRAEM FKRSNSGINL KFDSPSGTGT MSSARSFMSS 180 LSMDGSVASL DAKSSSFHLI GGPAMSDPVN AQQAPRRRCS GRGEDGNGKC AATGRCHCSK 240 RRKLRLKRTI KVPAISNKIA DIPPDEYSWR KYGQKPIKGS PHPRGYYKCS SVRGCPARKH 300 VERCVDDPSM LIVTYEGEHN HTRMPTQSAQ A

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	2e-20	251	325	2	75	WRKY transcription factor 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU665428	0.0	EU665428.1 Triticum aestivum WRKY16 transcription factor mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020149329.1	0.0	protein WRKY1-like isoform X2
Swissprot	Q93WU6	3e-85	WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBL	A0A3B6JED1	0.0	A0A3B6JED1_WHEAT; Uncharacterized protein
TrEMBL	A0A453HCM9	0.0	A0A453HCM9_AEGTS; Uncharacterized protein
STRING	EMT24994	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2859	38	87

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04670.1	4e-72	WRKY DNA-binding protein 39

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]