PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25279
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 223aa    MW: 25628.2 Da    PI: 10.1321
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25279genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.66.2e-15135222194
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
               f+k +t+s+v+   +l lpk+f++++  k  ++  +tl de+g + + ++  rk +    l++ Wk F+  ++L +gD +vF+++++++f+lvv
  EMT25279 135 FVKPMTQSHVTGGFWLGLPKQFCTKYLPK--RDEWITLVDEKGTESDSYYLARKWG----LSAQWKAFAINHKLVDGDCLVFERIHQTRFKLVV 222
               89************************433..4568***************444444....9999*********************999999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.2E-18128222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.26E-20129222IPR015300DNA-binding pseudobarrel domain
CDDcd100172.08E-22133222No hitNo description
PROSITE profilePS508639.305135223IPR003340B3 DNA binding domain
PfamPF023622.2E-13135222IPR003340B3 DNA binding domain
SMARTSM010192.1E-11135221IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MAGAVAYEEQ RRRQVEENRR KLDQLNLHHL SAALRDAAVA PRPSPVKSAK RKPRGPPPGD  60
APPRRSGRVA SLPEQPNYRF EDTYADIEKK IRGSRTHSTR TDLIDRVYAT EEARTYATDM  120
AEELQAKLDP RHPSFVKPMT QSHVTGGFWL GLPKQFCTKY LPKRDEWITL VDEKGTESDS  180
YYLARKWGLS AQWKAFAINH KLVDGDCLVF ERIHQTRFKL VVM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3572000.0AK357200.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1048A23.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020185096.11e-164B3 domain-containing protein Os06g0194400-like isoform X2
SwissprotQ69V366e-87Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLM8BTL71e-165M8BTL7_AEGTA; B3 domain-containing protein
STRINGEMT252791e-166(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP175638103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.14e-48B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]