PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25332
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 570aa    MW: 63612.2 Da    PI: 4.9746
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25332genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH407.1e-13381428355
               HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
       HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
               ++h   ErrRR+++N+ f  L++l+P+ +      K++Ka+iL +++ Y+k+L+
  EMT25332 381 KTHVLSERRRREKLNEMFLVLKSLVPSiN------KMDKASILAETITYLKELE 428
               58999**********************77......****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.1E-4820211IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.431378427IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.37E-15381432No hitNo description
SuperFamilySSF474598.9E-18381439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-10381428IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-18382437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.2E-16384433IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MALSAAPAGQ APPLGKQLSY QLAAAVRSIN WTYAIFWSMS TGLRSPGVLT WKDGFYNGEV  60
KTRKIISLTT TEVTANDLIL QRSEQLRELY ESLLSGKADH RGRRPAASLS PEDLGEAEWY  120
YTLSMTYSFR PGQGLPGKSF ASNQHVWLYN AQYADTKAFK RALLAKISDH KLDHIFQTVV  180
CIPFMGGVLE LGTSDLVLED PDMVNAIGTS FWELPFQACL ESEAPSSSPS TNEIGNGEVD  240
IVVFEDLDHN VAERFISELG EVESMSDANI NCATKEVDDF YDLIEELDVC ALEDNLVMER  300
SFEFMSSLEM APDMDALRID DNTITLSSSV NGSRPSCFTV WKRSSDWEDM DVRDLGESQK  360
LLKKVVAGGG WTMRAQESNI KTHVLSERRR REKLNEMFLV LKSLVPSINK MDKASILAET  420
ITYLKELEQR VEELESSRAP SWHPKEATGR GLHDVARRKK IKLSTGCQRK APESEREDDD  480
GPTNVVNVTM MDNEVILEVQ CRWKKLLMTR VFDAIKSLRL DIVSVHTSTP GGLLELKIRA  540
THQVAAGSGT VAPGMITEAL QKAIGNRWQN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A6e-19182119192Transcription factor MYC3
4rqw_B6e-19182119192Transcription factor MYC3
4rs9_A6e-19182119192Transcription factor MYC3
4yz6_A6e-19182119192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1386391ERRRRE
2387392RRRREK
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020184127.10.0anthocyanin regulatory R-S protein-like
SwissprotP135261e-174ARLC_MAIZE; Anthocyanin regulatory Lc protein
TrEMBLM8CDY60.0M8CDY6_AEGTA; Anthocyanin regulatory Lc protein
STRINGEMT253320.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP93233109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.16e-92bHLH family protein
Publications ? help Back to Top
  1. Pattanaik S,Xie CH,Yuan L
    The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength.
    Planta, 2008. 227(3): p. 707-15
    [PMID:18075757]
  2. Huang ZA, et al.
    The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.).
    J Genet Genomics, 2012. 39(3): p. 149-56
    [PMID:22464474]
  3. Ludwig SR,Habera LF,Dellaporta SL,Wessler SR
    Lc, a member of the maize R gene family responsible for tissue-specific anthocyanin production, encodes a protein similar to transcriptional activators and contains the myc-homology region.
    Proc. Natl. Acad. Sci. U.S.A., 1989. 86(18): p. 7092-6
    [PMID:2674946]
  4. Li P, et al.
    Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize.
    PLoS ONE, 2018. 13(1): p. e0190670
    [PMID:29304111]