PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25449
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SBP
Protein Properties Length: 200aa    MW: 21076.1 Da    PI: 10.5053
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25449genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP75.87e-2486134250
               -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEE CS
       SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfh 50 
               Cq+e+C adlseak+yhrrhkvCe+h+ka+vv+v+gl+qrfCqqCsr+ 
  EMT25449  86 CQAERCGADLSEAKRYHRRHKVCEAHAKAAVVVVAGLRQRFCQQCSRYS 134
               ***********************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.0E-2480133IPR004333Transcription factor, SBP-box
PROSITE profilePS5114118.68383160IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.1E-2384137IPR004333Transcription factor, SBP-box
PfamPF031102.1E-1786133IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MDRKDKSRKS SSAASMAALA AAAAAGDVAR ADGMSGEEDQ KLKLVNVPVV SVGGSSSSAA  60
AVAVRRGSGA AGAVATGAAG AGGPSCQAER CGADLSEAKR YHRRHKVCEA HAKAAVVVVA  120
GLRQRFCQQC SRYSIHEQLH RLSIWLLAFL QPSQNSSSGN SKTISFRTCM RLYLLASFLV  180
TFQSTLIVCD KRPGSRKEKY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-1977133158squamosa promoter binding protein-like 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020152957.15e-35squamosa promoter-binding-like protein 13
TrEMBLM8BU011e-142M8BU01_AEGTA; Squamosa promoter-binding-like protein 8
STRINGEMT254491e-142(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.21e-10squamosa promoter binding protein-like 8