PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25510
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HD-ZIP
Protein Properties Length: 314aa    MW: 34371.9 Da    PI: 9.4218
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25510genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.45.2e-18106160256
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
               rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  EMT25510 106 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 160
               788899***********************************************98 PP
2HD-ZIP_I/II125.72.1e-40106195191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq++lLE+ F+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL++e +eLr +l
     EMT25510 106 RKKLRLTKEQSALLEDRFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKRCCETLTEENRRLQRELQELR-TL 195
                  69*************************************************************************************9.54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.1E-1895161IPR009057Homeodomain-like
SuperFamilySSF466898.13E-1997163IPR009057Homeodomain-like
PROSITE profilePS5007117.232102162IPR001356Homeobox domain
SMARTSM003897.8E-16104166IPR001356Homeobox domain
CDDcd000866.08E-16106163No hitNo description
PfamPF000462.3E-15106160IPR001356Homeobox domain
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
PfamPF021832.6E-10162195IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.3E-20162205IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSQEEVHDAG LALGLSLGGG GGGGGDGPSS AHRSSNSGRL TLWEAEPSLT LSMPDDTTMT  60
GTASGGVSSM SVGGAVKRER ADEADLGEMV SSTAVGAEED DDGSTRKKLR LTKEQSALLE  120
DRFKEHSTLN PKQKVALAKQ LNLRPRQVEV WFQNRRARTK LKQTEVDCEF LKRCCETLTE  180
ENRRLQRELQ ELRTLKVCRP PDHLPPRIPS FSSNPPLATR VSSSNSGLAV GLRLAATTYP  240
SRHFHRAIVI LSIPLNPSPF FSSVGGHPVS VFEPSCLHLA FPLRRHNQLH GLWLRLVLAE  300
PSQHVTTFSF RLGR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104110TRKKLRL
2154162RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
UniProtINDUCTION: In leaves by drought stress. {ECO:0000269|PubMed:17999151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0977881e-135FP097788.1 Phyllostachys edulis cDNA clone: bphylf059k15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173855.11e-115homeobox-leucine zipper protein HOX19-like
SwissprotA2XE761e-73HOX19_ORYSI; Homeobox-leucine zipper protein HOX19
SwissprotQ8GRL41e-73HOX19_ORYSJ; Homeobox-leucine zipper protein HOX19
TrEMBLM8BKI60.0M8BKI6_AEGTA; Homeobox-leucine zipper protein HOX19
STRINGEMT255100.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20553698
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-44homeobox from Arabidopsis thaliana