PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT25639

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

C3H

Protein Properties

Length: 844aa MW: 93331.7 Da PI: 6.2075

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT25639	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	20.5	8.6e-07	304	326	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 ++C ++++ G C G+ C+F+Hgp EMT25639 304 VPCYYYQK-GMCAKGNLCTFSHGP 326 79****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	77	214	238	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.69	241	267	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.3	243	266	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.286	300	327	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.8E-4	301	326	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.91E-5	302	325	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 844 aa Download sequence Send to blast
MDFQAPAGDD RRSTDLNKQA VDEQSPQQSA ADGKAKAGDQ TSGLTTLFVP KLHDSDPSVL 60 SAVLGASTKG KRTIFRSEVT YKRNGHIMVL VGVSLLVVPK SGYQLPLLPA TIRKERGWRD 120 ADRRDGWREG GRLYLFCRRA TIGEGSSLGP EACDGIACPE APTLWRFPLY SLRPGMLVGV 180 HFFDKHFGTE GNEACIFSIC RGDVTCKRNG DARKWQCLCY QLRRGKRGGS ECEYRHSDAA 240 RVNPRDCWYW FNGNCANAKC AFRHPPLDDL LGASATPRAP QQSAPQVPVT AQALPSNVTA 300 KPVVPCYYYQ KGMCAKGNLC TFSHGPQFAG NPALQPHLQL KNSNSWTKPS NSPQQSTTPA 360 VHGELKVGAQ NGRPAQKQNP TSRAYHSPGI YQNQNNNPYV LSGAAKSYQP QRSVQAESAE 420 NVMETGEFVR EPSAGSSVVA GSAEDDAERS FKEGHASSYR RASGEQNSGI RRQAHGGYEL 480 ERSSHRSSSD RLVSERRLMQ RESMPVTAES SDLRHRLLKQ RRLNDSRSTQ VPDRQDRRYP 540 EDERGSHHHR RGEERAAHDG LSRSRLQGRI KLPGEASLDR LGPHPHLEKE RGHRDRLSPP 600 KQTDLRAKLH DRLKARSNEE VPGNLKSSVV KASSGEDAGV VNFSGPKSLA ELRAKKAAYR 660 SGENTVKNAD RVARPARMTS EIVAKRDSPD PVPFDGPKPL SVILKRKREA ASADSGSMQE 720 EQVAGEEEQS LNNSRIVEND RVEASTEENE VEEEEFHPED DVMYDDDGLS PADDNTAEAA 780 ADVGKEELEE GQQEDLETAA EEEYDYEAAD DTNAEGENDY QEYEDDDDLE DDDDFARKVG 840 VLIS

Sequence ? help Back to Top

Protein Sequence Length: 844 aa Download sequence Send to blast

MDFQAPAGDD RRSTDLNKQA VDEQSPQQSA ADGKAKAGDQ TSGLTTLFVP KLHDSDPSVL  60
SAVLGASTKG KRTIFRSEVT YKRNGHIMVL VGVSLLVVPK SGYQLPLLPA TIRKERGWRD  120
ADRRDGWREG GRLYLFCRRA TIGEGSSLGP EACDGIACPE APTLWRFPLY SLRPGMLVGV  180
HFFDKHFGTE GNEACIFSIC RGDVTCKRNG DARKWQCLCY QLRRGKRGGS ECEYRHSDAA  240
RVNPRDCWYW FNGNCANAKC AFRHPPLDDL LGASATPRAP QQSAPQVPVT AQALPSNVTA  300
KPVVPCYYYQ KGMCAKGNLC TFSHGPQFAG NPALQPHLQL KNSNSWTKPS NSPQQSTTPA  360
VHGELKVGAQ NGRPAQKQNP TSRAYHSPGI YQNQNNNPYV LSGAAKSYQP QRSVQAESAE  420
NVMETGEFVR EPSAGSSVVA GSAEDDAERS FKEGHASSYR RASGEQNSGI RRQAHGGYEL  480
ERSSHRSSSD RLVSERRLMQ RESMPVTAES SDLRHRLLKQ RRLNDSRSTQ VPDRQDRRYP  540
EDERGSHHHR RGEERAAHDG LSRSRLQGRI KLPGEASLDR LGPHPHLEKE RGHRDRLSPP  600
KQTDLRAKLH DRLKARSNEE VPGNLKSSVV KASSGEDAGV VNFSGPKSLA ELRAKKAAYR  660
SGENTVKNAD RVARPARMTS EIVAKRDSPD PVPFDGPKPL SVILKRKREA ASADSGSMQE  720
EQVAGEEEQS LNNSRIVEND RVEASTEENE VEEEEFHPED DVMYDDDGLS PADDNTAEAA  780
ADVGKEELEE GQQEDLETAA EEEYDYEAAD DTNAEGENDY QEYEDDDDLE DDDDFARKVG  840
VLIS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365099	0.0	AK365099.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030O09.
GenBank	AK373189	0.0	AK373189.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3023E17.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020201475.1	0.0	zinc finger CCCH domain-containing protein 19-like
Swissprot	Q6K977	0.0	C3H19_ORYSJ; Zinc finger CCCH domain-containing protein 19
TrEMBL	M8BUL4	0.0	M8BUL4_AEGTA; Zinc finger CCCH domain-containing protein 19
STRING	EMT25639	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13097	21	23

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]