PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT25826
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family HSF
Protein Properties Length: 517aa    MW: 58101.8 Da    PI: 5.01
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT25826genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.16.5e-34981892102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+ye++ed+++++++sw   g sfvv+++ +f++++LpkyFkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +ll++i+
      EMT25826  98 FLIKTYEMVEDPATNRVVSWGPGGASFVVWNPPDFSRDLLPKYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANDDFIRGHMHLLKNIH 185
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
      EMT25826 186 RRKP 189
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004154.8E-6194187IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.49E-3594187IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.102.1E-3795187IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.9E-3098187IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-1998121IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-19136148IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340137161IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-19149161IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MGRRLGTRSP QADFSDGSPP EQVDSIDDKS LSLPTWLQRI FHRVRLDSCE QRAAPNRIQS  60
NPVEDFLAEL GRSTGMDIDM EGGSQPQPQG ASLSPAPFLI KTYEMVEDPA TNRVVSWGPG  120
GASFVVWNPP DFSRDLLPKY FKHNNFSSFI RQLNTYGFRK IDPERWEFAN DDFIRGHMHL  180
LKNIHRRKPV HSHSPQTQVN GPLAEAERRE YEEDISRLKH ENSVLVAELQ RQARQQCGLS  240
WLMQSLEDRL MAMERRQADV VASVRDTLQR RRGGVHPGQQ TMLELEPTDH FSKKRRVPRL  300
GFFVEEHSAA AAEEQRVPHL RAMGGETPGM VMVNAEPFEK MELALVSMEK LVQRAGDYAS  360
SEDMYNAAAA APSTDDPAHA DLQAAPVNLQ PSSPEIAESP GYAVQSPMLL FPEIHEDKHK  420
TMAEVDMSSE ASTTDTSQDE TTAEAEAETG VPHEPAVAND LFWERFLTDT PKPLAVEDSH  480
ESKDDVKTGL DCYWFGHRNN VEQITEQMGH LASAQKT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-237518711129Heat shock factor protein 1
5d5v_B2e-237518711129Heat shock factor protein 1
5d5v_D2e-237518711129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:12032317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2085470.0KF208547.1 Triticum aestivum heat shock factor A4e (HsfA4e) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020168481.10.0heat stress transcription factor A-4d-like
SwissprotQ93VB51e-155HFA4D_ORYSJ; Heat stress transcription factor A-4d
TrEMBLM8CQB90.0M8CQB9_AEGTA; Heat stress transcription factor A-4d
STRINGEMT258260.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32963778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.13e-66heat shock transcription factor A4A
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]
  3. Kojo K, et al.
    Regulatory mechanisms of ROI generation are affected by rice spl mutations.
    Plant Cell Physiol., 2006. 47(8): p. 1035-44
    [PMID:16816407]