PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT26018

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Protein Properties

Length: 557aa MW: 62050.8 Da PI: 9.1056

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT26018	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	49.8	6.3e-16	39	118	13	98
TT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 13 sgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 rl +p +f ++ + ++++ ++l+ +sg++W +l ++ ++ kGWkeFv+++ ++ g f++F++dgrs+f v +f+ EMT26018 39 GERLKIPPSFN-QYlQDQPTG--VVSLKGQSGNTWLAEL--ASDNEGLFFVKGWKEFVRDHSIEMGHFLTFRYDGRSKF--SVVIFD 118 5689****8.665777666..7***********..888888**************************9999..777776 PP
2	B3	47.9	2.5e-15	452	542	4	98
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 +++ s+v l lp +f++e+ ++ +++l+l +++g+sW+v++ y ++ l++GW +F +n+L+ D++vF+l + + + +v+++r EMT26018 452 IMKESYVYVGFFLNLPCEFVRECL--PRAHRKLKLWNPQGKSWDVNYVYYSERCVGGLSGGWGKFSLDNNLEKFDVCVFELFS--KDNIKVHIYR 542 678899999999*********5..345568***********887777777899*******************875..4446888876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-19	28	118	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	2.2E-13	29	120	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	4.12E-19	29	118	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	7.82E-17	29	118	No hit	No description
Pfam	PF02362	1.6E-14	39	118	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.31	40	120	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	6.1E-23	440	542	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	7.26E-22	442	542	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	8.4E-13	449	544	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.337	449	544	IPR003340	B3 DNA binding domain
CDD	cd10017	5.05E-22	451	542	No hit	No description
Pfam	PF02362	3.7E-13	452	542	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 557 aa Download sequence Send to blast
MAAADKERAR EKGKEKENGG EGGKFGQQFA RVFLPQLYGE RLKIPPSFNQ YLQDQPTGVV 60 SLKGQSGNTW LAELASDNEG LFFVKGWKEF VRDHSIEMGH FLTFRYDGRS KFSVVIFDGM 120 CIEKPSAFHA KPCKNLVVKI ESGKGDMDIN AADPSQASAA PLEETDPPEA VVVPLEESNQ 180 TTRKRIREID ANDSALQKSL RVREIDANGS ALQKSLRVRE IDANDSALQK SSRVREIDAN 240 DSALQSSRVR EIDANETALH KSSRVREIDA NDSALHKSSR VREIDANDSA LHKSSRVREI 300 DANDSALQKS SRVREIDAND SSLQKSSGLR EIDANDSALQ KSSIASDKDK KRCPAASVGT 360 YKSASTSLDS TEDSDSSSSM LEQSISCIKS ELTSPIRLGV SKDVARRGQN SATGKRQLRV 420 LSQRRLVTEI QKDNALLRAK QFKSKNPFGL QIMKESYVYV GFFLNLPCEF VRECLPRAHR 480 KLKLWNPQGK SWDVNYVYYS ERCVGGLSGG WGKFSLDNNL EKFDVCVFEL FSKDNIKVHI 540 YRVVPEITPF LPGPGKK

Sequence ? help Back to Top

Protein Sequence Length: 557 aa Download sequence Send to blast

MAAADKERAR EKGKEKENGG EGGKFGQQFA RVFLPQLYGE RLKIPPSFNQ YLQDQPTGVV  60
SLKGQSGNTW LAELASDNEG LFFVKGWKEF VRDHSIEMGH FLTFRYDGRS KFSVVIFDGM  120
CIEKPSAFHA KPCKNLVVKI ESGKGDMDIN AADPSQASAA PLEETDPPEA VVVPLEESNQ  180
TTRKRIREID ANDSALQKSL RVREIDANGS ALQKSLRVRE IDANDSALQK SSRVREIDAN  240
DSALQSSRVR EIDANETALH KSSRVREIDA NDSALHKSSR VREIDANDSA LHKSSRVREI  300
DANDSALQKS SRVREIDAND SSLQKSSGLR EIDANDSALQ KSSIASDKDK KRCPAASVGT  360
YKSASTSLDS TEDSDSSSSM LEQSISCIKS ELTSPIRLGV SKDVARRGQN SATGKRQLRV  420
LSQRRLVTEI QKDNALLRAK QFKSKNPFGL QIMKESYVYV GFFLNLPCEF VRECLPRAHR  480
KLKLWNPQGK SWDVNYVYYS ERCVGGLSGG WGKFSLDNNL EKFDVCVFEL FSKDNIKVHI  540
YRVVPEITPF LPGPGKK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4i1k_A	5e-13	422	543	22	142	B3 domain-containing transcription factor VRN1
4i1k_B	5e-13	422	543	22	142	B3 domain-containing transcription factor VRN1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK365926	0.0	AK365926.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039A04.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020166536.1	0.0	B3 domain-containing protein Os11g0197600-like
Swissprot	Q2R9D2	4e-78	Y1176_ORYSJ; B3 domain-containing protein Os11g0197600
TrEMBL	M8BW15	0.0	M8BW15_AEGTA; B3 domain-containing protein
STRING	EMT26018	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4461	37	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	2e-16	B3 family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]