PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT26046
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 607aa    MW: 67190.4 Da    PI: 5.2535
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT26046genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.31.7e-10240309176
               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
               f+k +++s+v    +l lp +f+++h  k  +++ ++lede+g  ++ k+   + +++  l++GW++F+  +++k+
  EMT26046 240 FVKHMLHSHVVHGFWLGLPSDFCNKHLPK--KDTAVVLEDEDGHNYDAKY--LGAKQG--LSAGWRGFAINHDIKV 309
               899********************999533..5679***************..888877..9********9999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.1E-11234309IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.22E-14234309IPR015300DNA-binding pseudobarrel domain
CDDcd100179.39E-17238309No hitNo description
PfamPF023621.2E-8240309IPR003340B3 DNA binding domain
SMARTSM010191.4E-4240323IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MAGSWFLRTC LETSDELFSR AVLRSVGEVG WNGKCTFFTG KMKKRGRPAG GGSPSVNNSE  60
RDKMVMEKKM ALVHRRLALL DSESDKETDV VPTATMDDRL AIVVDQQPVV INCDDTDDKD  120
EYVPLRIVRP RRADSEQKRL FDVSQTHNAQ DTDTAKKKRG RLVNAKSDME QKLNMSTPGL  180
ALVESGGSNS SKSDVDDDLV PMVAAVNCQK TCTSVQGNFG SAMERAEELL VELPAEHPSF  240
VKHMLHSHVV HGFWLGLPSD FCNKHLPKKD TAVVLEDEDG HNYDAKYLGA KQGLSAGWRG  300
FAINHDIKVY ILRANNFTTT DGALGLLCLE AGKEKIPKEE SSNDVKSEAG KEKIPKEESS  360
NDVKSEAGKE KIPKESSIDV KSEAGKEKIP KEESSIDVKS EEKPKVAQSD SSNLASESIT  420
DGIKFSDTAI DFDDVKDFSS FSIIVDGLAI DCEFPDQQRE TYYELCCAQK SFLHKDLLKG  480
LNITLVVGAI METIDIAEGI RACKARVPSR KDFVVWKKNL QALKLLGMNV DFLLKRVDGL  540
LSLPARPRAP AEVKLERART VAKIKEVESR ISSVKDTLEE IDVEMEEMES SAKIVDEMMQ  600
LLATAPW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703060.0HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189684.10.0B3 domain-containing protein Os01g0234100-like
TrEMBLM8CQV70.0M8CQV7_AEGTA; B3 domain-containing protein
STRINGEMT260460.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60802345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-28B3 family protein