PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT26150
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family B3
Protein Properties Length: 171aa    MW: 18226.9 Da    PI: 4.7057
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT26150genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B367.22.3e-21591152985
               -..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
        B3  29 kkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                + +++ l +ed +g++W+++++y+++s++yvltkGW++Fvk+ gL++gD+v F+++
  EMT26150  59 RNGKGVLLNFEDGEGKVWRFRYSYWNSSQSYVLTKGWSRFVKETGLRAGDTVAFYRS 115
               3457889***********************************************954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010194.1E-449122IPR003340B3 DNA binding domain
CDDcd100172.44E-1657115No hitNo description
Gene3DG3DSA:2.40.330.107.7E-2359131IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.68E-1960118IPR015300DNA-binding pseudobarrel domain
PfamPF023621.8E-1861115IPR003340B3 DNA binding domain
PROSITE profilePS5086311.85766133IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MASGKATKPG MEDDNDMEYS SAESGAEDSA AESSSPVLAP PRAAPSSRFK GVVPQPNGRN  60
GKGVLLNFED GEGKVWRFRY SYWNSSQSYV LTKGWSRFVK ETGLRAGDTV AFYRSAYGND  120
TEDQLFIDYK KMNKNDGAAD AAVSDENETG HVAVKLFGVD IAGGMAGSSG G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A2e-296213650121DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-156HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191027.14e-70putative AP2/ERF and B3 domain-containing protein Os01g0140700
SwissprotQ9AWS71e-41Y1407_ORYSJ; Putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLM8BME01e-121M8BME0_AEGTA; Uncharacterized protein
STRINGEMT261501e-122(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3711133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68840.23e-33related to ABI3/VP1 2