PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT26237
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family SBP
Protein Properties Length: 898aa    MW: 98228.5 Da    PI: 6.623
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT26237genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP111.35.8e-35191266176
               --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
       SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
               +Cqv+gCead+ e+k yh+rh+vC  ++++++v+++g+++r+CqqC++fh l +fDe+krsCrr+L++hn+rrr+k
  EMT26237 191 RCQVPGCEADIRELKGYHKRHRVCLRCAHSSAVMIDGVQKRYCQQCGKFHILLDFDEDKRSCRRKLERHNKRRRRK 266
               6************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.4E-27184253IPR004333Transcription factor, SBP-box
PROSITE profilePS5114129.419189266IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.14E-33190269IPR004333Transcription factor, SBP-box
PfamPF031102.2E-26192266IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055070Biological Processcopper ion homeostasis
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 898 aa     Download sequence    Send to blast
MASAHLALRR SLSYNGSNRT GGVDAAGAGG GGAAADAGEP VWDWDNLLDF TIPEDDSLLL  60
PWDDPLGIEG DPTNEGALLP APPPPQPVEA EPAPPPPSPP AEAGGSRRGV RKRDPRLVCP  120
NYLAGIVPCA CPELDEMAAA AEVEEVAAEA LAGPRKKPRA ASRGSSGAVV KIGGAGGGSG  180
VAGRGGAAEM RCQVPGCEAD IRELKGYHKR HRVCLRCAHS SAVMIDGVQK RYCQQCGKFH  240
ILLDFDEDKR SCRRKLERHN KRRRRKPDSK GTLEKEIDEQ LDLSADGSGN GEIREENIDG  300
ASCDMLETVL SNKVLDRETP VGSEDALSSP TCTQLSLQND RSKSIVTFAA SAEACLGAKQ  360
ENAKLTNSPV HDSKSAYSSS CPTGRISFKL YDWNPAEFPR RLRNQIFEWL SSMPVELEGY  420
IRPGCTILTV FIAMPQHMWD KLAEDTANLV RNLVNAPSSL LLGKGAFFVH ANNTIFQVLK  480
DGATLMSTRL EVQAPRIHCV HPTWFEAGKP IELLLCGSSL DQPKFRSLLS FDGEYLKHDC  540
CRLTSRGTFG CVKNGAPTFD SHHEVFRINI TQTKPDTHGP GFVEGTKYVH ETLQADKRHR  600
QVENVFGLSN FVPILFGSKQ LCFELERIQD ALCGSSKYKS ANGEFPGITS DPCEHWKLQQ  660
TAMSGFLIEI GWLIKKPSPD EFKNLLSKTN VKRWICVLEF LIQNNFINVL EMIVKSSDNI  720
IGSEILSNLE SGRLEHHVTA FLGYIRHARI IVDQRAKHNE ETQLQTRWCG DSVSDQPSLG  780
TSVPLGKENV TASDDFCLPS TNAECEEEES VPLVTNEAVS HRQCCPSEMN ARWLNPALVA  840
PFPSGVMRTR LVATVAVAAI LCFTACVAVF HPDRVGVLAA PVKRYLFRDC PPWHHSGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul5_A2e-37191273587squamosa promoter binding protein-like 7
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1248266KRSCRRKLERHNKRRRRKP
2252264RRKLERHNKRRRR
3259266NKRRRRKP
4260265KRRRRK
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00604PBMTransfer from AT5G18830Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2503120.0AK250312.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf72c21, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161545.10.0squamosa promoter-binding-like protein 9
SwissprotQ6I5760.0SPL9_ORYSJ; Squamosa promoter-binding-like protein 9
TrEMBLM8CGD60.0M8CGD6_AEGTA; Squamosa promoter-binding-like protein 9
STRINGEMT262370.0(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69223344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18830.21e-137squamosa promoter binding protein-like 7
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]