PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT26446

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

MYB_related

Protein Properties

Length: 1561aa MW: 167351 Da PI: 6.451

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT26446	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.8	5.9e-09	584	626	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT eE e + + + +G++ +++I++ ++ ++t +c+++++k+ EMT26446 584 PWTHEEKEVFMQMLASFGKN-FSKISNFLQ-HKTTADCVEFYYKH 626 8***************99.*****.**********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.35E-14	567	629	IPR009057	Homeodomain-like
PROSITE profile	PS51293	14.727	580	631	IPR017884	SANT domain
SMART	SM00717	2.2E-8	581	629	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	3.3E-7	583	628	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-6	583	626	IPR001005	SANT/Myb domain
PROSITE profile	PS51293	14.846	791	842	IPR017884	SANT domain
SMART	SM00717	6.9E-5	792	840	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.72E-8	795	837	IPR009057	Homeodomain-like
CDD	cd00167	4.85E-4	796	834	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1561 aa Download sequence Send to blast
MAERARQSAT AGAASEKNAP SQSAAVADSQ SAEEETPRKK PRLGWGQGLA KYEKQKVPGS 60 SESAEPVAEG SPGGVEQKEV EGAPAPALCA SPVAAPAAQP SAPALCASPV AAPAAPSAPP 120 SSSPVPEDKS CELTTNTVTV SNKDIPGAEV QAYNDEIPIK LGQLDGDRIG SLANVLAELL 180 QHEDSCSGDS RRLTNSSKLL LLKENIAREL EKTELEIDSL ECELKSVSTE SENKALEDAQ 240 NPSPSSGTSK ILAKPATSKV LAKPETSKVL AKPEICGTSS SPKEQGVLTP CKLSVEQEAD 300 ANGVDLMDVV TAPVRGVTAV SSGESVACPG VVAEAQVAVA ADVAPLKPSE GTGSQIDAHC 360 PRQEPSLSHD NVSSMKADGS NALSTRQCSH HNDNRNLIPS IIAVNNDIAK EFNELVFKPL 420 PAGQPCLGLS SQMKNDLSVR KKLCMHKNRL RFKEQALTFK FKVLRHLWKE DVRLLSVRKQ 480 RPKSNKRTDQ SNRASQSGSQ RQRSSNRSRL GMPAGNLSTF PTTEISDVAN KMFTEFQFKR 540 CRNYLKMPAL IIDEKEKESA SFVSKNGLIE DPVSVEKERS VINPWTHEEK EVFMQMLASF 600 GKNFSKISNF LQHKTTADCV EFYYKHHKSD SFREVKKLLD LRQQQPTGNY LGTKSGKKWN 660 PENAASLDML GNAASVVAAH GLDYANRVEK DTEKSIIRTS CRSDVSAVAK GSFDKDGIAN 720 VSLHERESVA ADVLAGICGT LSPEGMGSCI TSSADHGQKI GATRMEYLIA TPEADKSFDE 780 EDDLSDQECE VDSVDWNDNE KSLFIEALNN HGKDFARISS YVKSKSYEQC KVFFSKARIS 840 LGLDLIYQQT TDTGLPTGDA SGGRSDTDEA CAAEMDSPIC STQSPVEMEM EVCPSADKTL 900 QGHLLSGITF KQSETDRSDG PDIVDLTFEE GEIKAEDTNN CNIPVHHGQS SEATHQSTPS 960 CAPIDINSSE STGSMENREH SNQVSVHGNG AMASSTEQSV GAHLEISSSL HNVEVIEPSK 1020 ASEKICTQVS SREHAPESCA PSSAGNLTTP VFLPGVIQSS NVYEGICTKE SSVERPSQQA 1080 PLSAHMKAGN LTLSVCLPGE QSSKVSSIEG PSKHAPESAH VKAGNLAPSV CLPGESGSKE 1140 NVAHFPDMAG VSCIRPAFTS SYQQSVPTDL LPAKPKSQVT PLTPKDLMPV QFSSDLPDPT 1200 SIRFEGIASI TSPNFGDHAN RVSNTPGPKD MNKFPVFNEQ SRSQHDVLFR NIDGYLQHRR 1260 NHHLAVDIPA FSDSTVSGSV GISHPDQFTI TKYQNGRSGS SGLSSSSAGF LMNGSSKELR 1320 EGQLKPCSHK ASTESCDQVK RPGDVKLFGK ILSHQSSLQS SGSSSNATRS KPPPPTTAAG 1380 LLGSGMDRMV YSSRPTNTAH FGQDERVVRS YTHLDGSTAQ PESSLFRVAK CQRSSLASVP 1440 FYSAKNGTLG VFAEYQQPLR QQLPSDPKRL ESYADLQKRN GIELISGFQQ QQQPGKAARL 1500 RGGGQQQPGK AARLGGAGIL VSPVSDPVAA LKAQYGSSSK FLGKDADHPW KDIGNRNLTD 1560 R

Sequence ? help Back to Top

Protein Sequence Length: 1561 aa Download sequence Send to blast

MAERARQSAT AGAASEKNAP SQSAAVADSQ SAEEETPRKK PRLGWGQGLA KYEKQKVPGS  60
SESAEPVAEG SPGGVEQKEV EGAPAPALCA SPVAAPAAQP SAPALCASPV AAPAAPSAPP  120
SSSPVPEDKS CELTTNTVTV SNKDIPGAEV QAYNDEIPIK LGQLDGDRIG SLANVLAELL  180
QHEDSCSGDS RRLTNSSKLL LLKENIAREL EKTELEIDSL ECELKSVSTE SENKALEDAQ  240
NPSPSSGTSK ILAKPATSKV LAKPETSKVL AKPEICGTSS SPKEQGVLTP CKLSVEQEAD  300
ANGVDLMDVV TAPVRGVTAV SSGESVACPG VVAEAQVAVA ADVAPLKPSE GTGSQIDAHC  360
PRQEPSLSHD NVSSMKADGS NALSTRQCSH HNDNRNLIPS IIAVNNDIAK EFNELVFKPL  420
PAGQPCLGLS SQMKNDLSVR KKLCMHKNRL RFKEQALTFK FKVLRHLWKE DVRLLSVRKQ  480
RPKSNKRTDQ SNRASQSGSQ RQRSSNRSRL GMPAGNLSTF PTTEISDVAN KMFTEFQFKR  540
CRNYLKMPAL IIDEKEKESA SFVSKNGLIE DPVSVEKERS VINPWTHEEK EVFMQMLASF  600
GKNFSKISNF LQHKTTADCV EFYYKHHKSD SFREVKKLLD LRQQQPTGNY LGTKSGKKWN  660
PENAASLDML GNAASVVAAH GLDYANRVEK DTEKSIIRTS CRSDVSAVAK GSFDKDGIAN  720
VSLHERESVA ADVLAGICGT LSPEGMGSCI TSSADHGQKI GATRMEYLIA TPEADKSFDE  780
EDDLSDQECE VDSVDWNDNE KSLFIEALNN HGKDFARISS YVKSKSYEQC KVFFSKARIS  840
LGLDLIYQQT TDTGLPTGDA SGGRSDTDEA CAAEMDSPIC STQSPVEMEM EVCPSADKTL  900
QGHLLSGITF KQSETDRSDG PDIVDLTFEE GEIKAEDTNN CNIPVHHGQS SEATHQSTPS  960
CAPIDINSSE STGSMENREH SNQVSVHGNG AMASSTEQSV GAHLEISSSL HNVEVIEPSK  1020
ASEKICTQVS SREHAPESCA PSSAGNLTTP VFLPGVIQSS NVYEGICTKE SSVERPSQQA  1080
PLSAHMKAGN LTLSVCLPGE QSSKVSSIEG PSKHAPESAH VKAGNLAPSV CLPGESGSKE  1140
NVAHFPDMAG VSCIRPAFTS SYQQSVPTDL LPAKPKSQVT PLTPKDLMPV QFSSDLPDPT  1200
SIRFEGIASI TSPNFGDHAN RVSNTPGPKD MNKFPVFNEQ SRSQHDVLFR NIDGYLQHRR  1260
NHHLAVDIPA FSDSTVSGSV GISHPDQFTI TKYQNGRSGS SGLSSSSAGF LMNGSSKELR  1320
EGQLKPCSHK ASTESCDQVK RPGDVKLFGK ILSHQSSLQS SGSSSNATRS KPPPPTTAAG  1380
LLGSGMDRMV YSSRPTNTAH FGQDERVVRS YTHLDGSTAQ PESSLFRVAK CQRSSLASVP  1440
FYSAKNGTLG VFAEYQQPLR QQLPSDPKRL ESYADLQKRN GIELISGFQQ QQQPGKAARL  1500
RGGGQQQPGK AARLGGAGIL VSPVSDPVAA LKAQYGSSSK FLGKDADHPW KDIGNRNLTD  1560
R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4a69_C	9e-16	542	633	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D	9e-16	542	633	4	94	NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020148930.1	0.0	uncharacterized protein LOC109734119
TrEMBL	M8CRX8	0.0	M8CRX8_AEGTA; Nuclear receptor corepressor 1
STRING	EMT26446	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6299	35	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G52250.1	3e-70	MYB family protein