PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT26838

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

bHLH

Protein Properties

Length: 300aa MW: 33174.8 Da PI: 4.3897

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT26838	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	25.8	1.9e-08	160	188	3	30
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C CS HLH 3 rahnerErrRRdriNsafeeLrellPk.a 30 ++h + ErrRR+++N+ f L++l+P+ EMT26838 160 KNHVISERRRREKLNEMFLILKSLVPSiH 188 6899**********************955 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-8	151	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.788	157	211	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	3.24E-7	160	190	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.0E-7	160	189	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.8E-6	160	188	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MAVLEDRDML NWINTSFWDL QFTTCSKSAE PNSNPSADDA GEADIVFEDL DRNTMAVVIP 60 GELELGQVEF MSDSTKEINE FYGLCDELDV EALEENWIMG GSFELIVLCG LEEIMGLGRS 120 VAAPVDGESQ KLLKKALASG AWANNGGDDT ARAQESINTK NHVISERRRR EKLNEMFLIL 180 KSLVPSIHKG LEHKVEELES NRAAGIAVRK CHEVPGKKVL AGSKRKAPEV GGDDAERVLT 240 KDDGLSSVVN VTVTDKEVLL EVQCQWKELL MTQVFDAIKS LCLDVLSVRA VRVVIMVYDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	170	ERRRRE
2	166	171	RRRREK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcriptional activator. Control tissue-specific synthesis of anthocyanin pigments in various parts of the maize plant.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KM382423	8e-96	KM382423.1 Triticum aestivum MYC-like regulatory protein (Myc4) gene, partial cds.
GenBank	KM382427	8e-96	KM382427.1 Triticum turgidum subsp. durum MYC-like regulatory protein (Myc3) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020177997.1	1e-145	anthocyanin regulatory R-S protein-like
Refseq	XP_020177998.1	1e-145	anthocyanin regulatory R-S protein-like
Swissprot	P13027	2e-55	ARRS_MAIZE; Anthocyanin regulatory R-S protein
TrEMBL	M8BYJ6	0.0	M8BYJ6_AEGTA; Anthocyanin regulatory R-S protein
STRING	EMT26838	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP932	33	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63650.3	1e-16	bHLH family protein

Publications ? help Back to Top
Pattanaik S,Xie CH,Yuan L The interaction domains of the plant Myc-like bHLH transcription factors can regulate the transactivation strength. Planta, 2008. 227(3): p. 707-15 [PMID:18075757] Huang ZA, et al. The upregulation of NtAN2 expression at low temperature is required for anthocyanin accumulation in juvenile leaves of Lc-transgenic tobacco (Nicotiana tabacum L.). J Genet Genomics, 2012. 39(3): p. 149-56 [PMID:22464474] Perrot GH,Cone KC Nucleotide sequence of the maize R-S gene. Nucleic Acids Res., 1989. 17(19): p. 8003 [PMID:2798145] Li P, et al. Combined bulked segregant sequencing and traditional linkage analysis for identification of candidate gene for purple leaf sheath in maize. PLoS ONE, 2018. 13(1): p. e0190670 [PMID:29304111]