PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT27005

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

Trihelix

Protein Properties

Length: 353aa MW: 38085.9 Da PI: 7.1986

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT27005	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	46.2	1.2e-14	1	47	17	63
trihelix 17 meerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykk 63 m+ ++r+++lk+plWe+vs++++e g +rs+k+C++k+en+ kry++ EMT27005 1 MDAAFREAALKGPLWEQVSRRLAEMGHTRSAKKCRKKFENVDKRYQE 47 6889*****************************************86 PP
2	trihelix	81	1.7e-25	46	110	22	87
trihelix 22 rrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +++ k+plWee+s+ mr+ g++rs+k+Ckekwen+nk++kk+ke+++kr +e+s+tcpyf+ql+a EMT27005 46 QEAGPKGPLWEEISAGMRRMGYNRSSKRCKEKWENINKYFKKVKESSRKR-PEDSKTCPYFHQLDA 110 567789*****************************************8.99*********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	1.04E-13	1	48	No hit	No description
Pfam	PF13837	1.5E-9	4	47	No hit	No description
CDD	cd12203	8.91E-23	42	89	No hit	No description
Pfam	PF13837	5.9E-17	51	111	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence Send to blast
MDAAFREAAL KGPLWEQVSR RLAEMGHTRS AKKCRKKFEN VDKRYQEAGP KGPLWEEISA 60 GMRRMGYNRS SKRCKEKWEN INKYFKKVKE SSRKRPEDSK TCPYFHQLDA LYRTKALASS 120 SSSSGVHAPA LAPAPSPARV EPAAVTVLSP VPLSSQTPPP AAQHVEHGAK NVITNGNGHG 180 NGNGAAMQVK ASNGSGAAAM FPSPVHAAGN AGNNNGTATN KLELKQEGIA KETAPVQPAV 240 AMNHSYGRND RRDVYDLDSD SMDEDEEDDF DDDDDDEEDD DAVPGGRNIN MPPAQYDAHF 300 LQRQHQQQQH QNHNHNVVRP NAANGSGTPP AGNAAASSAA AATSGTPFLA MVQ

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence Send to blast

MDAAFREAAL KGPLWEQVSR RLAEMGHTRS AKKCRKKFEN VDKRYQEAGP KGPLWEEISA  60
GMRRMGYNRS SKRCKEKWEN INKYFKKVKE SSRKRPEDSK TCPYFHQLDA LYRTKALASS  120
SSSSGVHAPA LAPAPSPARV EPAAVTVLSP VPLSSQTPPP AAQHVEHGAK NVITNGNGHG  180
NGNGAAMQVK ASNGSGAAAM FPSPVHAAGN AGNNNGTATN KLELKQEGIA KETAPVQPAV  240
AMNHSYGRND RRDVYDLDSD SMDEDEEDDF DDDDDDEEDD DAVPGGRNIN MPPAQYDAHF  300
LQRQHQQQQH QNHNHNVVRP NAANGSGTPP AGNAAASSAA AATSGTPFLA MVQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK357823	0.0	AK357823.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1062I19.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020163611.1	1e-144	trihelix transcription factor GTL1-like
TrEMBL	M8BPQ0	0.0	M8BPQ0_AEGTA; Uncharacterized protein
STRING	EMT27005	0.0	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP606	38	175

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76880.1	1e-42	Trihelix family protein