PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27197
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family NAC
Protein Properties Length: 171aa    MW: 19068 Da    PI: 10.2831
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27197genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM171.52.5e-53191481128
       NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk...kge 98 
               lppGfrFhPtdee+v++yL++k+ ++ +++  vi++vd++k+ePwdLp k+k +ekewyfF+++d+ky+tg+r+nrat++gyWkatgkdke+++    +  
  EMT27197  19 LPPGFRFHPTDEEVVTHYLTPKAVNNAFSC-LVIADVDLNKTEPWDLPGKAKMGEKEWYFFVHKDRKYPTGTRTNRATEKGYWKATGKDKEIFRGkgrDAV 118
               79**************************99.78***************99999****************************************98444444 PP

       NAM  99 lvglkktLvfykgrapkgektdWvmheyrl 128
               lvg+kktLvfy+grap+g kt  vmheyrl
  EMT27197 119 LVGMKKTLVFYTGRAPRGDKTPYVMHEYRL 148
               5***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-5716153IPR003441NAC domain
PROSITE profilePS5100551.35719171IPR003441NAC domain
PfamPF023656.3E-2820148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MSDVTAAVGL GGGGPRLSLP PGFRFHPTDE EVVTHYLTPK AVNNAFSCLV IADVDLNKTE  60
PWDLPGKAKM GEKEWYFFVH KDRKYPTGTR TNRATEKGYW KATGKDKEIF RGKGRDAVLV  120
GMKKTLVFYT GRAPRGDKTP YVMHEYRLAG QLAPRIPRSA KVMLAPLDGR D
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-501614814142NO APICAL MERISTEM PROTEIN
1ut4_B6e-501614814142NO APICAL MERISTEM PROTEIN
1ut7_A6e-501614814142NO APICAL MERISTEM PROTEIN
1ut7_B6e-501614814142NO APICAL MERISTEM PROTEIN
3swm_A6e-501614817145NAC domain-containing protein 19
3swm_B6e-501614817145NAC domain-containing protein 19
3swm_C6e-501614817145NAC domain-containing protein 19
3swm_D6e-501614817145NAC domain-containing protein 19
3swp_A6e-501614817145NAC domain-containing protein 19
3swp_B6e-501614817145NAC domain-containing protein 19
3swp_C6e-501614817145NAC domain-containing protein 19
3swp_D6e-501614817145NAC domain-containing protein 19
4dul_A6e-501614814142NAC domain-containing protein 19
4dul_B6e-501614814142NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to DNA in promoters of target genes on a specific bipartite motif 5'-[AG]CGT[AG](4-5n)[AG][CT]ACGCAA-3' (PubMed:16359384, PubMed:21303842). Triggers the expression of senescence-associated genes during age-, salt- and dark-induced senescence through a regulatory network that may involve cross-talk with salt- and H(2)O(2)-dependent signaling pathways (PubMed:21303842). {ECO:0000269|PubMed:16359384, ECO:0000269|PubMed:21303842}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Rapidly and strongly induced by H(2)O(2) treatment in both leaves and roots. Accumulates during senescence and in response to wounding. {ECO:0000269|PubMed:21303842}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3644980.0AK364498.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2025P03.
GenBankAK3646490.0AK364649.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2027E04.
GenBankAK3670980.0AK367098.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2051F14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020161331.11e-105NAC domain-containing protein 92-like
SwissprotQ9LJW35e-70NAC59_ARATH; NAC domain-containing protein 59
TrEMBLM8CIT61e-123M8CIT6_AEGTA; Protein CUP-SHAPED COTYLEDON 2
STRINGEMT271971e-123(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP186238104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.13e-68NAC domain containing protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Manacorda CA, et al.
    Salicylic acid determines differential senescence produced by two Turnip mosaic virus strains involving reactive oxygen species and early transcriptomic changes.
    Mol. Plant Microbe Interact., 2013. 26(12): p. 1486-98
    [PMID:23945002]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]