PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27244
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C2H2
Protein Properties Length: 108aa    MW: 11866.7 Da    PI: 11.5254
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27244genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-051333323
              ETTTTEEESSHHHHHHHHHHT CS
   zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
              C +C++ F+++  L  H++ H
  EMT27244 13 CVYCDRKFRSSQALGGHQNAH 33
              ******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.48E-6748No hitNo description
PROSITE profilePS5015711.0531138IPR007087Zinc finger, C2H2
PROSITE patternPS0002801333IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 108 aa     Download sequence    Send to blast
MAVTAAPGGF FLCVYCDRKF RSSQALGGHQ NAHKTERSVA KRRLEMAAAK RRRDIAATKR  60
AQHVSYSLSL AWKAREKAAP PGMLGPTGGK RARSSLERAD ELDLSLRL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14052KRRLEMAAAKRRR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3753406e-48AK375340.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3091J11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163440.15e-74uncharacterized protein LOC109748828
TrEMBLA0A3B6JNB61e-72A0A3B6JNB6_WHEAT; Uncharacterized protein
TrEMBLA0A453J0H11e-72A0A453J0H1_AEGTS; Uncharacterized protein
STRINGEMT272445e-73(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18336274
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.13e-13zinc finger protein 4