PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27321
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family C3H
Protein Properties Length: 144aa    MW: 16445.4 Da    PI: 8.0076
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27321genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93e-074364526
              --SGGGGTS--TTTTT-SS-SS CS
   zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
              +C+ f+++G C+ Gd C +aHg
  EMT27321 43 PCPEFRKGGSCRKGDGCEYAHG 64
              8********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.13E-53768IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.853866IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-43865IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-54264IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-54366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MYSFKVKPCS RAYSHDWTEC PFVHPGENAR RRDPRRYSYS CVPCPEFRKG GSCRKGDGCE  60
YAHGVFECWL HPAQYRTRLC KDEGDELHKF RKSASFGFRG QSAMPAAAPA TPAEPDVSWV  120
NSLVKDGHTG DHFPQWLEQE QMVA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3545651e-135AK354565.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1008I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569054.17e-56zinc finger CCCH domain-containing protein 33
SwissprotQ688R32e-56C3H33_ORYSJ; Zinc finger CCCH domain-containing protein 33
TrEMBLM8CU691e-104M8CU69_AEGTA; Zinc finger CCCH domain-containing protein 33
STRINGEMT273211e-105(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP60132133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58620.13e-52C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]