PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27370
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family GATA
Protein Properties Length: 949aa    MW: 106924 Da    PI: 8.2458
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27370genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA34.82.2e-115177935
      GATA  9 TplWRrgpdgnktLCnaCGlyyrkkgl 35
              TplWR+gp  ++ LCnaCG ++r kg+
  EMT27370 51 TPLWRNGPPHKPVLCNACGSRWRTKGS 77
              ********88888***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.108.0E-85077IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577166.18E-65082No hitNo description
PfamPF003204.3E-95077IPR000679Zinc finger, GATA-type
CDDcd002021.75E-95188No hitNo description
Gene3DG3DSA:1.25.40.101.2E-14612888IPR011990Tetratricopeptide-like helical domain
PROSITE profilePS513759.01612646IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007560.0028615642IPR002885Pentatricopeptide repeat
PfamPF138121.1E-4615660IPR002885Pentatricopeptide repeat
PROSITE profilePS513757.563647681IPR002885Pentatricopeptide repeat
PfamPF138124.2E-5670709IPR002885Pentatricopeptide repeat
PROSITE profilePS513758.495682716IPR002885Pentatricopeptide repeat
TIGRFAMsTIGR007561.5E-5684712IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.982718748IPR002885Pentatricopeptide repeat
SuperFamilySSF484525.69E-7718888IPR011990Tetratricopeptide-like helical domain
SMARTSM000287.4719752IPR019734Tetratricopeptide repeat
PfamPF015350.11721747IPR002885Pentatricopeptide repeat
PROSITE profilePS513756.029788822IPR002885Pentatricopeptide repeat
PROSITE profilePS513759.054823857IPR002885Pentatricopeptide repeat
PfamPF015350.19826854IPR002885Pentatricopeptide repeat
PROSITE profilePS513755.207858892IPR002885Pentatricopeptide repeat
SMARTSM0002810859892IPR019734Tetratricopeptide repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006399Biological ProcesstRNA metabolic process
GO:0009658Biological Processchloroplast organization
GO:0019288Biological Processisopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 949 aa     Download sequence    Send to blast
MASTIPLFPA ANEEGHPICS ASTTLSRGQN AKELRKRFFQ WHQKWRAFKG TPLWRNGPPH  60
KPVLCNACGS RWRTKGSLEN YTPMHSRDDI DADQPRVSKL KPPTLRLKEQ RQLKKKPSHS  120
IRENGAFSDQ NFWKMGDADP SRSSSGSALS YSESCAPYGS ADASEMGSAQ SHAWESLVPS  180
KKRSCVTRTK SSSVDMLVKD LHCIMHEEQL CYLSGSSEED LIYHTATPVG SFEIGYGSML  240
LRSSNSKSAE EDSEANSVPA DNKSFLTSES YSGTASFVVH SESKGASNSN ASPEKPKWFP  300
VQTHEIVKRG KLHYSKQHTL ENVGSALVSV ALEGEGTKET GGNENTSALK DLTKSTMKPL  360
KRPHESQLQS CQEGTMRIAK KVCKSVAMAP QFKGSFLPKS GGAPFNLLML PPDKISMLAP  420
PQYMDNSDQD LLLEVPLNVR QPEAELLCQP FQLSSVTRSS SSADVVADGE GRLKQPMWAF  480
GESITHITVE NRRTLSWGKW KMKMISGIQP VAYLGSLIFP LEHVGISITG PSFREWQVIL  540
IPDGIMYRQG LMCQFIVNWK LTGKVYDWMT DRRDRFSLSS SDMAIQLDLI AKVRGVPDAE  600
EYFEKLPDPL KDKRTYGSLL NVYAQARMKE KTEYTFEQMR KKAFATDTLP FNVLMNFYVD  660
VAEPEKVSTV TDEMKQRNIA FDVCTYNIWI KCCAAMKDAD AMERVFNQMI ADESVVANWT  720
TYTTLASMHI KLENFEKAEE CLKEAEKRAT GRDKKCFHFL ITLYSHLQKK EEVYRIWNWY  780
KATFKTIHNL GYQEVLSALV RLGDIEGAEL LYEEWASKSS SFDPKTMNIL LAWYSREGFV  840
VKAEQTLNRF VEKGGNPKPN TWEILATAYL KDNQFAESLS CLEKATAVKS ASKWRPRPTN  900
VESLLAYFKE KNDTESVDRL MSLLRSRGCA ENEEYKSLFD TYALAVAGT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5i9f_A4e-1361288415286pentatricopeptide repeat protein dPPR-U10
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3625810.0AK362581.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2008F08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652600.20.0PREDICTED: uncharacterized protein LOC102708611
TrEMBLM8BQU20.0M8BQU2_AEGTA; Pentatricopeptide repeat-containing protein
STRINGEMT273700.0(Aegilops tauschii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.21e-42GATA transcription factor 26