PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

EMT27471

Organism

Aegilops tauschii

Taxonomic ID

37682

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops

Family

WRKY

Protein Properties

Length: 234aa MW: 25131.1 Da PI: 9.611

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
EMT27471	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	107.9	4.9e-34	109	166	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d vv++tYeg+H+h+ EMT27471 109 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSFQDAAVVITTYEGKHTHP 166 8********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.3E-35	93	168	IPR003657	WRKY domain
SuperFamily	SSF118290	1.31E-29	100	168	IPR003657	WRKY domain
PROSITE profile	PS50811	31.904	103	168	IPR003657	WRKY domain
SMART	SM00774	4.3E-40	108	167	IPR003657	WRKY domain
Pfam	PF03106	7.1E-27	109	166	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MADSSGREEP CATSHWRPGG TAHSVSVSST SSEAGVGGGA GAGEDEAGKC KQEEGEGDDE 60 SKEAAADGEA DKTKKGAAKG KGAAKVKGEK RPRQARFAFM TKSEVDHLED GYRWRKYGQK 120 AVKNSPFPRS YYRCTTQKCP VKKRVERSFQ DAAVVITTYE GKHTHPIPAT LRGANHLLAA 180 HAHAHGGHGL IHPGMFRMPA PPGAFRPGDA LGSFLQQQHA AMQHQQQQTK FCLL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	7e-28	99	169	8	78	Probable WRKY transcription factor 4
2lex_A	7e-28	99	169	8	78	Probable WRKY transcription factor 4
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY341844	1e-104	AY341844.1 Oryza sativa (japonica cultivar-group) WRKY3 mRNA, complete cds.
GenBank	AY341855	1e-104	AY341855.1 Oryza sativa (japonica cultivar-group) WRKY14 mRNA, complete cds.
GenBank	AY870604	1e-104	AY870604.1 Oryza sativa (japonica cultivar-group) WRKY16 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020198305.1	1e-150	probable WRKY transcription factor 28
TrEMBL	M8CUJ1	1e-172	M8CUJ1_AEGTA; Putative WRKY transcription factor 71
STRING	EMT27471	1e-173	(Aegilops tauschii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP623	37	173

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G29860.1	7e-47	WRKY DNA-binding protein 71