PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT27472
Organism
Aegilops tauschii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family bHLH
Protein Properties Length: 219aa    MW: 23948.5 Da    PI: 9.8839
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT27472genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.91.8e-0869113554
               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
       HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
               h+++Er RR+ri +++  L+el+P+       K + a +L +  +Y+k L
  EMT27472  69 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAVMLDEILDYVKFL 113
               99***********************7.....59**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.92E-1062118No hitNo description
SuperFamilySSF474594.06E-1562123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.69464113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-1466124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-669113IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-970119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MERDGVQLPG LFPPVFGGGL QPPHLRPSHP PPQMFHAQQP KQGGPAGGPQ PPAPRPKVRA  60
RRGQATDPHS IAERLRRERI AERMRALQEL VPNTNKTDRA VMLDEILDYV KFLRLQVKVL  120
SMSRLGGAGA VAQLVSDIPL SVKGEASDGG SKQQIWEKWS TDGTEKQVAK LMDEDIGAAM  180
QFLQSKALCM MPVSLAMAIY DTQHSQDGQP VKPEPNNTA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1044120.0AK104412.1 Oryza sativa Japonica Group cDNA clone:006-203-H10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020191801.11e-158transcription factor UNE12-like
SwissprotO227682e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLM8CJH51e-158M8CJH5_AEGTA; Transcription factor UNE12
STRINGEMT274721e-159(Aegilops tauschii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26563580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.35e-65bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]